| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_4081 |
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| Symbol | |
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| ID | 1185761 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4588320 |
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| End bp | 4591742 |
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| Gene Length | 3423 bp |
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| Protein Length | 1140 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637395428 |
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| Product | Rhs family protein |
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| Protein accession | NP_793843 |
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| Protein GI | 28871224 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.451767 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTGAAG CTGCCCGGTT GCACGATGGA ATTGAGCACA CTGGCGCATT GGGTGGGCTT
CTGGCGGGCG CTGTCATTGG CATCGCGATG GCCGTGGCTG GCGCAGCCCT GATTGTCTGC
ACCGCAGGAC TCGGTGCCAT TCTTCTGGGC GTAGTGTTAT CCATCGGTGC GGGGGCGGCG
CCGGCGATGG GTGAAAGCTG GGGGGCAGCG CGAACGACGC CGGCAGGCGA TATCATGCAG
ACGGGATGTT CGCCCAACGT CTTTATCAAT GGCCGTAATG CGGCTCTGGC CACTCAAACT
ACCGCTAAGT GCGAAAATCA CCCTGCGCCC ATTTTGATTG CCGACGGCTC TACCAACGTT
TTCATCAACG GCCATCCCGC TGCGCGCAAG GGTGACAAGG TCACCTGCGG TGCAAAAATC
GGCACCGGGT CCAATAACGT TTTTATTGGC GGTGGTACAA AGCGCTATCT GAAAGTGAAC
GAGGAAGTTC CTGAAGCGCT TCGCGTTGCC GTCGATATCG CCATCATCGT TGCCTCCATG
GGGCGTGCCG GGCTACCCAT GTTGACCAAG GGGCTTGCAC AGGGGCTTAA AGCCGTTGCC
CCTTGCGCCT TGAAAGTTGC CGCCCTGGCG GGTGGCTCCT ACCTGTTCGG ACGTTTTGTT
GCCGGGCCTG CAATAAACGG GGTGATCGGC GGCTTCAGCG GCAACCCCGT CGACCTCACC
AGCGGACGAA AGTTATTGCT TGAAGAGGGT GAAACCGACT TTGCACTGCC GGGACTGATG
CCCATTGAAT GGTCGCGCTT TTACGCCAGC GACCTGAATG TCGACAGCGT CCTGGGCAAA
GGCTGGGTGC TGCCCTGGGA GCAGAGCCTG CGCCGAAATG GCAGCTTTGT TTACCTCATC
GACAATCAGG GGCGCAGTGT GCCCTTCGTC AATGTCGAGC CCGGTCACAG TATCTACAAC
CCTTACGAGC AGATGCACCT GGTCCGCACG CAAGGCGGCC ACTACATGCT GCAGACTCAG
GACAACATCT TCTTCTACTT CGGCGAAGTG CCGAACGACA GCAAGCCTGT TCCGCTGCAA
CGCATCGAAA ATGCACTCGG TCATTACCTG CATTTCAGCC GTACCGAGGA AGGCACCCTG
ACCGACATCA GCGCCACCGG TAATGTGCAT GTGCACTTGC AGTACGAGCA CCCGCTGGGA
CGGCTGACGT CGGTGAAGCG CATCGTCAAC AAGGAAGCTG TTGAAACCCT CGCGCGTTAC
CACTACGACG ACAACGGCCA GCTCAGTGAC GTCTATAACC GCAATGGCGA TTCCATTCGC
AGCTTCTCTT ACACCGACGG CGTGATGACC CGCCACAGCA ATGCACTGGG CCTGAACTGT
TACTACCGTT GGGAAACCAT CGACGGCCAG CCCCGCGTGG TCGAACACTG GACCAGCGAT
GGCGAGCATT ACCATTACCG GTATGACTTT AAACAGCGCA CCTCGTGGGC CGTCGATGTG
CTGGGCCGTG AACTGGAAGT TCATTACAAC GAAGACCGTC GAGTCACTTC CGGCCGTGAT
TACGGTGGCG AACACTACAC CATCGATATC GACGAAAACG GCAATATAAC GGGGCTGGTA
TTGCCCGATG ACAACACGCT GACCTTCAAA TACGACCACC TCTCGCGGCT GGTTGAAGAA
ACCGACCCGC TCGGGCGCAA GATCACCTAC AAACATCATC TGGCGACCAC GCTGGTGACC
CAGACAACCT ACCCCGACGG CAGCACGTGG AAGGCCCGCT ACGACTCCCG AGGCAATCTG
CTGATCGAGA CCGACGCGCT TGGCCACAAG ACCGAATACC TCAACAGCGA AGATGGCCTG
CCACACACCA TCATCGATGC GACCTACAAG TCCAAGTACC TGTGGTGGAA CAGCCTGGCA
CAAGTGGTGC GCTTCCAGGA CTGCTCAGGC AAAGACACCC ACTACCGCTA TGACGATCGC
GGCCACCTGA TTGCCGTGAC CGATGCGCTG AACACCACCA CCACGCTGGA GCGCAAACCC
GACGGCGAAG TGCTGCGCAT CAACCACCCG GACGGCAGCG TTGAGTCCTT TGCCTACAAC
GCGCTGGGTC AGGTCGTTTC GCACACCAAT GGCAAAGGCC AGATCACCCG GCTGTCACGC
AATGCCCGTG GTTTGCCGAC CCGACGTGAA GACGCCAAGG GCAAAGCCGT TGCCTACCAG
TACGACAAGG CCATCCGCCT CGTCGCCCTG ACCAACGAAA ACGATGCCAC CTACAACTTC
GCCTACGACA ACTCCGACCG CCTGATCGAA GAAAAGCGCA TCGACAACCT CACCCGCCGT
TTCAGCTACA ACCTCGGCGG CCACCTGACT CAGGTCGAGG AAATCGGCTA CGGCGACAAA
GGCGAACAGC CAAGCCGCAG CACCTTTCTT GAGCGCGACC CGATTGGGCG CCTGCTGGCC
AAACTCAACG ACGATGCGCG TCAGGACTAC GAATACGACG ACGGCGACCG GCTGCTGTCG
ATTCAGCGCA AACAGACCGA CACCGGCAGA AAACTCGGCG TCACCGCCGA GAAACTGGAA
TTTACCTACG ACCTGCTGGG CCGCCTGACG AAAGAGACCA CGCCACAAGG CGCGCTGACC
TACGACTACG ATCCGCTGAG CAACCTGACC ACGCTGACGC TTCCCACCGG CCAGCACCTG
AACCATCTGT ATTACGGCAG CGGCCACCTG CATCAGTTGA ATCTTGATGG CCAGTTGATC
AGCGACATGG AGCGCGACGA CCTGCACCGC GAGATCTACC GCACGCAGGG CAAACTCACC
AGTTGCTTCG GCTACGACAG CATGGGCCGC AAGGCCTGGC AGTACGCCAC GACCCTGCCT
GCTGAAAAGC TGTCGCAGAT CCAGAACCCG CTCATCAAGC CCGAGCGATA CGTCGAACAC
GCCTACAACT CCATCCACCG CCGTTACGAA TACGACCCGG CCGGCGAACT GAGCCGCACC
CTCGACAAAC TGCGCGGCGA AACCCGCTAC GAATACGAAG CCAACGGCCA GTTGCTGGCG
CGCAACAACG GCTTGATCGT CGATGGCGAA GAGTTCCGCT ACGACGCAGC GGCCAACCGC
CTGAACTTCA ACACCAGCCG CTTTGACCAC GTCAAAGACA ACCGCCTCAA ACAGTGGCGC
AACCACGAAT ACAAATACGA TGCCTGGGGC AACCTGATCG AAAAAGCCGT CGGCATCGTG
CGCTGGCAAA CCTTCACCTA CGACTGCGAA AACCGCCTGG TCAAAACCGA GACCATGGCC
GATACGCAGG TGGAAAGCAC CAACCCACCT ACACCCTTGC CATCGCCGCC AACGCAACCG
ACGTCGCCGC CGTCCGCGTC TCCACCCCCA ACTTCACATA AATATGCTCC AGATGTTTGT
TAA
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| Protein sequence | MFEAARLHDG IEHTGALGGL LAGAVIGIAM AVAGAALIVC TAGLGAILLG VVLSIGAGAA
PAMGESWGAA RTTPAGDIMQ TGCSPNVFIN GRNAALATQT TAKCENHPAP ILIADGSTNV
FINGHPAARK GDKVTCGAKI GTGSNNVFIG GGTKRYLKVN EEVPEALRVA VDIAIIVASM
GRAGLPMLTK GLAQGLKAVA PCALKVAALA GGSYLFGRFV AGPAINGVIG GFSGNPVDLT
SGRKLLLEEG ETDFALPGLM PIEWSRFYAS DLNVDSVLGK GWVLPWEQSL RRNGSFVYLI
DNQGRSVPFV NVEPGHSIYN PYEQMHLVRT QGGHYMLQTQ DNIFFYFGEV PNDSKPVPLQ
RIENALGHYL HFSRTEEGTL TDISATGNVH VHLQYEHPLG RLTSVKRIVN KEAVETLARY
HYDDNGQLSD VYNRNGDSIR SFSYTDGVMT RHSNALGLNC YYRWETIDGQ PRVVEHWTSD
GEHYHYRYDF KQRTSWAVDV LGRELEVHYN EDRRVTSGRD YGGEHYTIDI DENGNITGLV
LPDDNTLTFK YDHLSRLVEE TDPLGRKITY KHHLATTLVT QTTYPDGSTW KARYDSRGNL
LIETDALGHK TEYLNSEDGL PHTIIDATYK SKYLWWNSLA QVVRFQDCSG KDTHYRYDDR
GHLIAVTDAL NTTTTLERKP DGEVLRINHP DGSVESFAYN ALGQVVSHTN GKGQITRLSR
NARGLPTRRE DAKGKAVAYQ YDKAIRLVAL TNENDATYNF AYDNSDRLIE EKRIDNLTRR
FSYNLGGHLT QVEEIGYGDK GEQPSRSTFL ERDPIGRLLA KLNDDARQDY EYDDGDRLLS
IQRKQTDTGR KLGVTAEKLE FTYDLLGRLT KETTPQGALT YDYDPLSNLT TLTLPTGQHL
NHLYYGSGHL HQLNLDGQLI SDMERDDLHR EIYRTQGKLT SCFGYDSMGR KAWQYATTLP
AEKLSQIQNP LIKPERYVEH AYNSIHRRYE YDPAGELSRT LDKLRGETRY EYEANGQLLA
RNNGLIVDGE EFRYDAAANR LNFNTSRFDH VKDNRLKQWR NHEYKYDAWG NLIEKAVGIV
RWQTFTYDCE NRLVKTETMA DTQVESTNPP TPLPSPPTQP TSPPSASPPP TSHKYAPDVC
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