| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3988 |
|---|
| Symbol | proS |
|---|
| ID | 1185664 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 4494353 |
|---|
| End bp | 4496068 |
|---|
| Gene Length | 1716 bp |
|---|
| Protein Length | 571 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637395335 |
|---|
| Product | prolyl-tRNA synthetase |
|---|
| Protein accession | NP_793752 |
|---|
| Protein GI | 28871133 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0442] Prolyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00409] prolyl-tRNA synthetase, family II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.360667 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCACCA GTCAATTTTT GCTCGCCACA CAGAAAGAAA CCCCTTCCGA TGCGGTCGTG
GTCAGCCATC AGCTGATGCT GCGTGCCGGC ATGATCCGTA AACTGGCGTC CGGCCTCTAC
ACTTGGCTGC CCATGGGCCT GCGCGTGCTG CGCAAGGTCG AAGCGATCGT TCGTGAAGAA
ATGAACGCTG TCGGCGCACT TGAAATTCTG ATGCCCGGCA TTCAGCCTGC AGAGCTGTGG
CAGGAATCCG GTCGCTGGGA GCAATACGGC CCGGAGCTGA TGCGCCTGGT CGACCGCCAC
AACCGCGAAT TCTGCCTGGG CCCGACCCAC GAAGAAGTCA TCACCGATCT GGCCCGCAAT
GAGCTCAACA GCTATAAACA GCTGCCGATC AACATGTACC AGATCCAGAC CAAATTCCGT
GACGAGATCC GCCCGCGCTT CGGCCTGATG CGCGGCCGCG AGTTCGTCAT GAAAGACGCC
TACTCGTTCC ACGCCGACAA CGCTTCGTTG CAGGTCACAT ACGACCGCAT GCACCTGGCG
TACAGCAACG TATTCAGTCG CCTGGGCCTG AAGTTCCGCC CGGTCGAGGC TGACAACGGC
TCGATCGGTG GCGCAGGCTC GCACGAGTTC CACGTCCTGG CCGAATCCGG CGAAGACGAT
ATCGTGTTCA GCAACGGCTC CGATTACGCC GCCAATATCG AAAAAGCCGA GGCAGTGCCT
CGCGAAAAAG CGCGTGCGGC CGCTACTGAA GAGCTGCGCC TGGTCGACAC ACCGAATGCC
AAGACCATCG CGCAACTGGT CGAAGGCTTC GGTTTGCCAA TCGAAAAGAC GGTAAAGACG
CTGGTTGTGC ACGCTGCCGA AGAAGGCAAG CTGATCGCGC TGATCATTCG CGGCGATCAC
GAACTCAACG AAATCAAGGC CAGCCAGCAA GAACTGGTCG CCAGCCCGCT GGTGATGGCG
TCCGAAGCAG AACTGCGTGA CGCCATCGGC GCAGGCGCAG GCTCGCTCGG CCCATTGAAT
CTGCCGCTGC CGTGCATCAT CGACCGTTCG GTCGAGCTGA TGAGCGACTT CGCCGTCGGC
GCCAACATCG ACGACAAACA TTATTTCGGC GTCAACTGGG AGCGCGACTT GCCGGTGCCG
ACCGTTGCTG ACCTGCGTAA CGTGGTTGCC GGCGATCCAA GCCCGGATGG CCAGGGCACG
CTGGAAATCA AACGCGGTAT CGAAGTGGGC CACATCTTTC AGCTGGGCAC CAAATACAGC
GAAGCGATGA AGTGTCAGGT ACTGGGTGAA AACGGCAAAC CGGTCAATCT GGCCATGGGT
TGCTACGGTA TCGGCGTTTC TCGAGTGGTT GCCGCCGCCA TCGAACAGAA CAGTGACGAA
AACGGCATTA TCTGGAACGA CACACTGGCA CCTTTCCAGA TCGCGCTGAT TCCACTGCGT
TACGAAACCG ACGCCGTCCG TGAAGCGACA GACAAACTGT ATGCCGAGCT GACCGCCGCC
GGCTTTGAAG TGCTACTTGA TGACCGCGAC AAGAAGACCA GCCCGGGCAT CAAGTTCGCC
GACATGGAAC TGATCGGTAT TCCGCATCGC ATCGTGGTCA GTGATCGTGG CCTGGCCGAA
GGCAATCTGG AATACAAGAG CCGTACCGAG TCGCAACCGC AAGCCATTGC CGTCGCGGAT
GTGCTGTCGT TCATTCAGGG CCGAGTGAAA CGCTGA
|
|---|
| Protein sequence | MRTSQFLLAT QKETPSDAVV VSHQLMLRAG MIRKLASGLY TWLPMGLRVL RKVEAIVREE
MNAVGALEIL MPGIQPAELW QESGRWEQYG PELMRLVDRH NREFCLGPTH EEVITDLARN
ELNSYKQLPI NMYQIQTKFR DEIRPRFGLM RGREFVMKDA YSFHADNASL QVTYDRMHLA
YSNVFSRLGL KFRPVEADNG SIGGAGSHEF HVLAESGEDD IVFSNGSDYA ANIEKAEAVP
REKARAAATE ELRLVDTPNA KTIAQLVEGF GLPIEKTVKT LVVHAAEEGK LIALIIRGDH
ELNEIKASQQ ELVASPLVMA SEAELRDAIG AGAGSLGPLN LPLPCIIDRS VELMSDFAVG
ANIDDKHYFG VNWERDLPVP TVADLRNVVA GDPSPDGQGT LEIKRGIEVG HIFQLGTKYS
EAMKCQVLGE NGKPVNLAMG CYGIGVSRVV AAAIEQNSDE NGIIWNDTLA PFQIALIPLR
YETDAVREAT DKLYAELTAA GFEVLLDDRD KKTSPGIKFA DMELIGIPHR IVVSDRGLAE
GNLEYKSRTE SQPQAIAVAD VLSFIQGRVK R
|
|---|
| |