Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3987 |
Symbol | oprD |
ID | 1185663 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 4492830 |
End bp | 4494176 |
Gene Length | 1347 bp |
Protein Length | 448 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 637395334 |
Product | porin D |
Protein accession | NP_793751 |
Protein GI | 28871132 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.286909 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGAGTGA TGAAGTGGAG CGCAATCGCA CTGGCCGTTA CGGCAGCCAG CACCCAACTG GCAACAGCGG CACCTTTCGT CAGCGATCAG GCTGAGGCCA AGGGTTTCGT CGAAGGCAGC ACGCTTGACC TGAAGTTGCG CAATTACTAC TACAACCGTG ACAGAAAGAA TAATCCCGCT CCGGGCGGCC GTAGTGACAA AGACTGGACT CAGGGCATCT GGGCCAACTT CAGCACTGGC TACACCCAAG GCACTATAGG TGTCGCCGCA GAGGCCTTCG GTTACGGCGC CCTCAGACTC TGGGGTCCAG ACAAGTATTC GGGCTCGGGC AACCTGGTTA CCGACTCCAA TGGCGACAAC GAAGCAACAC AAGGTAAATT TGGCGGTGCT GTGAAATTCC GCGTTTCGAA GACAGAGCTG AAAGTGGGCG ACATGCAGCC GACCAGCCCT GTATTCGCAG TTGGCGGTTC GCGCATACTG CCTCAGACCG CTAGCGGCCT GAGCCTGCAG AGCAGCGAGA TTGCCGGTCT TGACCTTGAA GCTGGACATT TTTACTCAGG CACAAGCCAG GATGACACCA GCCACAACGG TAGCATCTGG GCAACCTACG CCAATGGTTT TAATGGCCTG AAAGCTAATA GTGCGGATTT CCTGGGCGGT AAATACGCAA TAACCGACGG CCTGGGCGTA GCTTTTTACG CAGCCAAGCT CGAAGATATC TGGGATCAGT ACTACGGCAA CGTGAACTAC GCGCTGCCTC TGGGCAATGA CCAGTCCTTG GCGTTTGACG TCAACCTTTA TCGCACACTT GACGAGGGTA GCTCCAAAGC TGACTCGATC AACAACACTA CGTACTCAGC TTCGGCAGCC TATTCCTTCT TGGCAGCGCA CACCGTTACT GTCGCGTATC AGAAGGTCGA CGGTGACACT CCATTCGACT ACATCGGCAT CGGCGACAAT AATCGTGGTG GCGACTCTAT CTTCCTGGCC AACTCCGTTC AGTACTCTGA CTTCAACGGC CCGGGCGAAA AGTCGTGGCA GATTCGCTAT GACCTGAACA TGACTCCTTA TGGCGTTCCT GGCCTGAGCT TTATGACTCG CTACCTCAAT GGTGACAATA TTGACGGTAC CAAAGTGGAT GCCTCCAGCC TGTACGCCAA CATGTACGGC GCAGACGGCA AACACCACGA AACCAACCTT GAAGCTAAAT ATGTAGTTCA GGCTGGCCCG GCGAAAGATC TGTCCTTCCG CATGCGTCAA GCCTGGCACC GCGGCAATGA TGCTCAGTCA GACGGCGACG TCAACGAGTT CCGCCTGATT GTCGATTACC CGATCTCGAT CCTGTAA
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Protein sequence | MRVMKWSAIA LAVTAASTQL ATAAPFVSDQ AEAKGFVEGS TLDLKLRNYY YNRDRKNNPA PGGRSDKDWT QGIWANFSTG YTQGTIGVAA EAFGYGALRL WGPDKYSGSG NLVTDSNGDN EATQGKFGGA VKFRVSKTEL KVGDMQPTSP VFAVGGSRIL PQTASGLSLQ SSEIAGLDLE AGHFYSGTSQ DDTSHNGSIW ATYANGFNGL KANSADFLGG KYAITDGLGV AFYAAKLEDI WDQYYGNVNY ALPLGNDQSL AFDVNLYRTL DEGSSKADSI NNTTYSASAA YSFLAAHTVT VAYQKVDGDT PFDYIGIGDN NRGGDSIFLA NSVQYSDFNG PGEKSWQIRY DLNMTPYGVP GLSFMTRYLN GDNIDGTKVD ASSLYANMYG ADGKHHETNL EAKYVVQAGP AKDLSFRMRQ AWHRGNDAQS DGDVNEFRLI VDYPISIL
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