| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3960 |
|---|
| Symbol | pglA |
|---|
| ID | 1185635 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 4468247 |
|---|
| End bp | 4469845 |
|---|
| Gene Length | 1599 bp |
|---|
| Protein Length | 532 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637395308 |
|---|
| Product | polygalacturonase |
|---|
| Protein accession | NP_793726 |
|---|
| Protein GI | 28871107 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5434] Endopolygalacturonase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0761528 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGGCG CCGCACACTT CTCCAACTCC GCTTTCCGAA AAACCTCTTG GGCAATTACC
TCTCTGACCG CTTCGCTGAT GATCGCCGCG CCCGTACAGG CCGCTGGCGA GGCTGCAGTG
GTAACGCCCT GGGGCACGAT AAACGAGCCC GCCAGCCCGC AGGTCTGCAA GCAATTATCG
GCCGCGTTGG CCCCCAAGGA TGGCTCGCTG GACAGCGTCG ACAGCGCGGC GCTCTACTCC
AGACCTGACC AGGACAGAAT TCAGAGCGCA ATCAATGGCT GCGCAGCCGG GCAAGCCGTC
CAACTGATTA AAGGCACTGG CGACAACTCG GCATTCCTCA GCGGAGCCCT GCAGCTTAAA
TCCGGCGTTA CGCTGTGGAT CGACGACGGC GTTACGCTCT TCGCGTCACG CAACCCCAAA
GACTACGACA ACGGCAAAGG CACCTGCGGC GTAACAACGA TCGCCAATCA GGACGCCTGC
AGCTCGCTGA TTTCAGCAAA AAATACCCGC GCCAGCGGCG TGATCGGAAA AGGCGTGATA
GACGGTCGCG GCGGCAGCCT GCTCACCTCC GGGGCAAATG CCAACCAGCG CAGCTGGTGG
GACCTCGTCT ACCAGAAGAC CCTGTCCAAC GCTTATCAGC AAAAGCCGCG CCTCATCCAG
GTCAGTGGCG GAACGGACTT CGTCATCCAG GGAGTGACAC TGCAAAACGC CCCGGACTTC
AACATTGTGA CTGACGGCGT GACAGGCGTG ACTGTCTGGG GGATCAAGAT TCTGACTCCA
AGCCGGGTCT ACACGGTTGA AGGCTACCAC TGTCCTACCG GCTCGACGCC CGACCAGAAG
ACCCCTGGCA CCTGTTTCAC CCCGGAAACC GTGAAGAACA CCGATGGCTT CGACCCCGGC
CAGTCAAACA AGGTACTGCT GGCCTACTCC TACATCAGCA CCGGCGACGA CAATGTAGCG
ATAAAGTCCA GCCGGACCTC CGGCAGCCGC GACCTGATGT TTGCGCACAA CCATTTCTAC
TATGGGCACG GCTTGTCCAT CGGCAGTGAA ACCAACGGCG GCGTACATAA CGTCAGCGTT
GTGGATCTTG CAGCGGACGG CGCAGATAGC CAGGACGGCA TTGGGCTCAG AATCAAGTCG
GGAGCCAAAA ACGGCGGAAT CGTAGACGGC GTCAGCTACG AGAATGTGTG CATGCGTAAC
GTCAAATTCC CGCTGGTGTT CGACACCCAG TACGGCAGCG CCAGCGGAAC CTCGTACCCT
GACTTCAGCG GTATCACCGT CAAAGGCTTC CACTACCTGG GCAGCCCGAG ATTCGGCGGC
GGCAAGATGA CTTTTGTTGG CTACAACGAC AACGGTCAGA AACGGCCGAT TTCCATTACG
CTGGATAACG TTGTTTTCGA TGGCACCCAG CCCAACCTCA CCGGTCTTAC GGCGACCCAC
TTCATTCTGG GGCCAGGGCC GGTGAGTTTT GCCAACAAGC TGGTGCCTTC GATAAAGGAT
AACGTCACGG TCTCCGGCAG TCCTGGAGAG GGCACGCCGG TCGATTGCAC GGCAGCGTTT
GTGCCGATGA AATCCGTGGT GCCTGGGGCT CCGTTTTAA
|
|---|
| Protein sequence | MSGAAHFSNS AFRKTSWAIT SLTASLMIAA PVQAAGEAAV VTPWGTINEP ASPQVCKQLS
AALAPKDGSL DSVDSAALYS RPDQDRIQSA INGCAAGQAV QLIKGTGDNS AFLSGALQLK
SGVTLWIDDG VTLFASRNPK DYDNGKGTCG VTTIANQDAC SSLISAKNTR ASGVIGKGVI
DGRGGSLLTS GANANQRSWW DLVYQKTLSN AYQQKPRLIQ VSGGTDFVIQ GVTLQNAPDF
NIVTDGVTGV TVWGIKILTP SRVYTVEGYH CPTGSTPDQK TPGTCFTPET VKNTDGFDPG
QSNKVLLAYS YISTGDDNVA IKSSRTSGSR DLMFAHNHFY YGHGLSIGSE TNGGVHNVSV
VDLAADGADS QDGIGLRIKS GAKNGGIVDG VSYENVCMRN VKFPLVFDTQ YGSASGTSYP
DFSGITVKGF HYLGSPRFGG GKMTFVGYND NGQKRPISIT LDNVVFDGTQ PNLTGLTATH
FILGPGPVSF ANKLVPSIKD NVTVSGSPGE GTPVDCTAAF VPMKSVVPGA PF
|
|---|
| |