| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3953 |
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| Symbol | dapA |
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| ID | 1185628 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4461435 |
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| End bp | 4462313 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637395301 |
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| Product | dihydrodipicolinate synthase |
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| Protein accession | NP_793719 |
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| Protein GI | 28871100 |
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| COG category | [E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
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| TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.121624 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTGCGG GCAGTATGGT GGCACTGGTC ACACCAATGG ATGCACAAGG TCGTCTGGAC
TGGGACAGCC TGAGCAAACT GGTTGACTTC CACTTGCAAG AGGGCACCAA CGCCATTGTT
GCCGTCGGCA CCACAGGTGA ATCGGCGACG CTGGATGTGA GCGAACACAT CGAAGTCATC
CGCCGTGTGG TTGCTCAGGT TGCAGGACGT ATTCCGGTCA TCGCCGGTAC AGGCGCCAAT
TCGACGCGCG AAGCCGTCGA GCTGACCACC AACGCCAAGA CCGCTGGCGC TGATGCGTGC
CTGCTGGTAA CGCCTTATTA CAACAAGCCG ACGCAGGAAG GCCTGTTCCA GCATTTCAGC
CACATCGCCA ATGCCGTAGA CATCCCGCAG ATCCTCTACA ACGTGCCGGG CCGTACGGCC
TGCGACATGC TGCCAGAGAC TGTTGCGCGT CTGTCCAGGG TCAAGAACAT CATCGGCATC
AAGGAAGCCA CCGGCAACCT GCAGCGCGCC AAGGACATTC TGGCCAGCGT CAGCAGCGAT
TTTCTGTTGT ACTCCGGTGA TGACGCGACG GCTGTCGAAC TGATGCTGTT GGGCGGCAAG
GGCAATATTT CCGTCACGGC CAACGTTGCA CCACGCGCCA TGAGCGATCT GTGCGCAGCG
GCCATGCGTG GCGACGCCGA GACTGCACGG GCGATTCACC AGACGCTCAT GCCGCTCAAC
AATACCCTGT TCATCGAATC CAACCCTATC CCCGTGAAAT GGGCCTTGCA TGAGATGGGT
TTGATGCCAG ACGGTATCCG TCTGCCGCTT ACCTGGCTCA GCGAAGCCTG TCACGAACCG
CTGCGTCAGG CCATGCGCCA GTCCGGCGTC CTGGTTTAA
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| Protein sequence | MIAGSMVALV TPMDAQGRLD WDSLSKLVDF HLQEGTNAIV AVGTTGESAT LDVSEHIEVI
RRVVAQVAGR IPVIAGTGAN STREAVELTT NAKTAGADAC LLVTPYYNKP TQEGLFQHFS
HIANAVDIPQ ILYNVPGRTA CDMLPETVAR LSRVKNIIGI KEATGNLQRA KDILASVSSD
FLLYSGDDAT AVELMLLGGK GNISVTANVA PRAMSDLCAA AMRGDAETAR AIHQTLMPLN
NTLFIESNPI PVKWALHEMG LMPDGIRLPL TWLSEACHEP LRQAMRQSGV LV
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