Gene PSPTO_3949 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3949 
Symbol 
ID1185623 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp4457531 
End bp4458574 
Gene Length1044 bp 
Protein Length347 aa 
Translation table11 
GC content56% 
IMG OID637395296 
Productsite-specific recombinase, phage integrase family 
Protein accessionNP_793715 
Protein GI28871096 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.0244166 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGGGGAAT TATGGGGGAA TGGGGGAGGA TGTTATTCCC CCGTACCACC GGTTATGATT 
CCGTTTATGG CCTATTACGA AAAGCGTGGC GACGCCTGGC GCGCCCAGAT ACGACGCAAA 
GGATATCCGA CGTTATCCGC AACCTTCGAC ACCAAAGCAG AAGCCCAGCG CTGGGCTGCT 
GAACTCGAAG GTGATATGTC GCGCGCGAGA TTTGTGGACG TGCGTGAGGC TGAAGCAACC 
AGTCTGGCCA CAGCTCTTGA GCGGTACGAA TCAGAAGTCA CAGAGAGCAA GAAGGGAGCC 
AAGCAAGAAA GGGTTCGCAT CAAGAAGTGG ATGGAGTCCA AGTTCGCGGG TAAATCATTG 
GCTTCTTTAC GATCGAGCGA TATGGCCTCC TATCGTGATG CAGAGATCAA AGCTGGCCGA 
TCCACTGCTA CCGTCCGTCT TGACCTCGCG GTCATCAGCC ATCTTTACAC CGTCGCGACA 
AAGGACTGGG GTATCGAAGG GCTGACGAAT CCATGTCGGG CATTGCGTAT GCCCAAAGGC 
AGCAAGCAGC GAGAACGCCG GCCGACTGCC GATGAATTGA AGTCGCTATA CAAGGCTGCC 
GGCGAAATCA GTCCAGAGTT GCCAGTTATC ATCGAGCTGG CTGTTGAGAC GGCGATGCGC 
CGATCCGAGC TGGTCACATT GCGTAAGGAT CAAATTCAGG GAAAGGTAGC TTTCCTTGAG 
GACACGAAGA ACGGCGAGCG CCGGTCAGTG CCGCTTTCAT CGAGAGCGCG CGAGCTGATA 
GAGGGGGTGC CTGCGCCTAT CAAGGGCGGG CCACTGTTCC GGCTTAAGGC CGATACGGTC 
AGTAACTACT TCCCGCTCGC TTGCGAGAAG GCGAATATCC AAGGGCTCCG CCTTCATGAC 
CTGCGGCATG AAGCCACAAG CCGCCTGTTT GAGCGCGGCT TCACCATGAT GGAAGTTGCC 
AGCATAACCG GGCACAAAAC TCTTGCGATG CTGAAGAGGT ATACCCATTT AAGCCCGCAA 
GACCTCGCTG AAAAGCTCGG TTAA
 
Protein sequence
MGELWGNGGG CYSPVPPVMI PFMAYYEKRG DAWRAQIRRK GYPTLSATFD TKAEAQRWAA 
ELEGDMSRAR FVDVREAEAT SLATALERYE SEVTESKKGA KQERVRIKKW MESKFAGKSL 
ASLRSSDMAS YRDAEIKAGR STATVRLDLA VISHLYTVAT KDWGIEGLTN PCRALRMPKG 
SKQRERRPTA DELKSLYKAA GEISPELPVI IELAVETAMR RSELVTLRKD QIQGKVAFLE 
DTKNGERRSV PLSSRARELI EGVPAPIKGG PLFRLKADTV SNYFPLACEK ANIQGLRLHD 
LRHEATSRLF ERGFTMMEVA SITGHKTLAM LKRYTHLSPQ DLAEKLG