| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3922 |
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| Symbol | rnd |
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| ID | 1185595 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4434945 |
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| End bp | 4436078 |
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| Gene Length | 1134 bp |
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| Protein Length | 377 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637395274 |
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| Product | ribonuclease D |
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| Protein accession | NP_793693 |
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| Protein GI | 28871074 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0349] Ribonuclease D |
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| TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGCCATCG ATATTCACTG GATTCGCGAC GACGACAGCC TCGCCCGGCA TTGCGCACAA
TGGCAGTCGC TGCCTTTTGT CGCGCTCGAC ACCGAGTTTA TGCGGGTCGA CACGTTTTAC
CCGATCGCAG CGTTGCTGCA GATTGGCGAC GGGCAAAGCG CCTGGCTGAT TGATCCGTTG
CTGATCAACG ACTGGGCACC TCTGTCTGCG CTGCTCGAAA ACCCCGCTGT CATCAAAGTG
GTGCATGCGT GCAGCGAAGA CCTCGAAGTC TTGCTGCGCC TGACTGGCAG CCTGCCGGTT
CCGTTGTTTG ATACCCAATT GGCAGCCGCG TACCTGAATC TCGGTTTTTC CATGGGCTAT
TCGCGTCTGG TGCAGGAGGT CCTTAATATC GATCTGCCCA AGGGCGAAAC CCGTTCCGAC
TGGCTGCAAC GCCCGCTGTC GGACACCCAG ATCAGCTACG CCGCCGAAGA TGCCGTGCAC
CTTGCCGAGC TGTTCGCCAT CCTGCGTCCG CGTTTGTCAG ACGACAAATA CGCCTGGTTG
CTGGATGACG GTGCTGAGCT GGTCGCCAAT CTGCGCCGCG AAGTCGACCC GTACGAGGTG
TATCGCGACG CCAAGCTGGC CTGGAAGCTG TCACGTGCCC AACTGGCGGT GCTGCGTGAA
CTCTGCGCCT GGCGCGAGGT TCAGGCCCGC GCCCGTAATT TGCCGCGCAA CCGCATCATA
CGTGAGCACT CGCTCTGGCC ATTGGCCAAA ACGCAGCCCG ACAACCTCGG CGCGCTGGCC
CGTATCGAAG ACATGCACCC GCGCACGGTC CGTCACGACG GCGAGTTTTT GCTGGAGCTG
ATTCAGACCG CAGCCAGTGT GCCGGCAGCA GAATGGCCGC CGGCATTGCC CGAGCCTTTG
CCGGTGGATG CTGCCGGGTC GATCAAACGC CTGCGCGCAA TCGGTCAGCA GTACGCCGAG
CAACTGGATA TGACGCCAGA GCTGATGCTG CGCAAGAAGA CCCTCGAAGC GCTGCTCAAG
AGCGGCTACC CCGACGGTCC TTACCAATTG CCCGATTCGC TGCGTGGCTG GCGTCGCGAA
TTGATGGGCC AGGCGCTGCT GGACAGCCTG GCTTCCTCTG GAGAACAGTC TTGA
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| Protein sequence | MAIDIHWIRD DDSLARHCAQ WQSLPFVALD TEFMRVDTFY PIAALLQIGD GQSAWLIDPL
LINDWAPLSA LLENPAVIKV VHACSEDLEV LLRLTGSLPV PLFDTQLAAA YLNLGFSMGY
SRLVQEVLNI DLPKGETRSD WLQRPLSDTQ ISYAAEDAVH LAELFAILRP RLSDDKYAWL
LDDGAELVAN LRREVDPYEV YRDAKLAWKL SRAQLAVLRE LCAWREVQAR ARNLPRNRII
REHSLWPLAK TQPDNLGALA RIEDMHPRTV RHDGEFLLEL IQTAASVPAA EWPPALPEPL
PVDAAGSIKR LRAIGQQYAE QLDMTPELML RKKTLEALLK SGYPDGPYQL PDSLRGWRRE
LMGQALLDSL ASSGEQS
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