Gene PSPTO_3899 details

Gene Information

• Locus tag: PSPTO_3899
• ID: 1185572
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 4410922
• End bp: 4412796
• Gene Length: 1875 bp
• Protein Length: 624 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 637395251
• Product: acyltransferase family protein
• Protein accession: NP_793670
• Protein GI: 28871051
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG0204] 1-acyl-sn-glycerol-3-phosphate acyltransferase
• TIGRFAM ID: [TIGR00530] 1-acyl-sn-glycerol-3-phosphate acyltransferases

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.516687
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCCAAC AGTCACAATT CAGCTTGCTC GGGAAACGTC GTTTCCTGCC TTTTTTTATC 
ACGCAGTCCC TCGGGGCGTT CAATGACAAT ATCTTCAAGC AGTCGTTGAT TCTTGCGGTC 
CTTTACAAGC TGAGCATCGA TGGTGATCGC TCTATCTACG TCAATCTGTG CGCTTTGCTG 
TTCATTCTGC CGTTCTTTCT GTTCTCGGCG CTGGCCGGGC AGTTCGGCGA GAAGTACCCC 
AAGGACAAGC TGATCCGCAT TATCAAGTTC GCAGAGATCG TCGTCATGGC GGTCGGGGCT 
GCGGGCTTTC TGTTCAATCA TCTGGAGTTG ATGCTGGCCG CACTGTTCGC CATGGGCACG 
CACTCTGCGC TGTTCGGACC GGTCAAATAT TCGATTCTGC CGCAGCACCT GCGCGAGACT 
GAGCTGGTCG GCGGCAACGC GCTGGTCGAG ATGGGGACTT TTCTGGCGAT CCTTGCCGGC 
ACCATCAGTG CCGGGGTGAT GATGTCCTCC TCTCACTACG GCTGGATAGT GTCGGCGGCG 
ATTGTGCTGG TCGCGTGTCT TGGTTTTGTG GCCAGTTTTG GTATTCCGAA CGCCGCTGCC 
GCTTCGCCGG AAATGAAGCT CAACTGGAAC ATTTTCACCC AGTCCTGGGC AACCCTGCGC 
ATGGGGCTGG GGCAAACGCC CGCCGTTTCG CGTTCGATTG TCGGCAACTC CTGGTTCTGG 
TTTGTCGGTG CGATCTACCT CACGCAGATT CCGGCTTACG CCAAAGAGTG GATGTACGGT 
GACGAAACAG TCGTCACGCT GATCCTGACG GTGTTCTCTG TCGGTATCGC ACTGGGCTCG 
CTGCTGTGCG AGCGGTTGTC CGGGCATAAA GTCGAGATCG GGCTGGTGCC GTTCGGCTCG 
ATGGGCCTGA CAATCTTTGG TCTGTTGCTG TGGTGGCATT CCGGTGGTTT CCCGCAGAAC 
GTGCAGGCCA ATGACTGGCT GGCGATCCTT TCCTACGGGC AGGGCTGGCT GGTGCTGTTC 
GACATTCTGG GCATCGGCGT GTTCGGTGGC TTCTACATCG TGCCGCTGTA TGCGCTGATC 
CAGTCCCGTA CGCCGGTGAA AGAGCGCTCA CGGGTCATCG CCGCCAACAA CATCCTCAAC 
GCGCTGTTCA TGGTGGTTTC GGCGATTGTT TCGATCCTGT TGCTGAGCTT CGCCAAACTG 
TCGATTCCGC AGCTGTTCCT GGCGATATCG CTGATGAACA TCGCGGTGAA TATCTACATC 
TTCAAGATCG TCCCCGAGTT CACCATGCGC TTCATGATCT GGCTGCTGGG CCATTCCATG 
TACCGCGTCG AGCACCGGGA TTTGAACCGG ATACCTGACG AGGGCGCGGC ATTGCTGGTC 
TGCAACCATG TGTCCTTTGT CGATGCATTG CTGATTGCCG GTGCGGTGCG GCGACCGATC 
CGCTTTGTGA TGTATTACAA GATCTACCAG CTGCCGGTGC TCAACTTCAT CTTCCGCACC 
GCCGGGACCA TCCCGATTGC CGGGCGCAAC GAAGACATGC AAATCTACGA ACAGTCGTTC 
AAACGTATCG CCCAGTACCT CGCGGAAGGC GAGCTGGTGT GCATCTTCCC TGAAGGCAAA 
CTGACCACCG ACGGCGAGAT CAACGGCTTC AAGAACGGCA TGAGCCGCAT CATCGAGCAA 
ACCCCGGTGC CGGTCATTCC GCTGGCACTG CAAGGCCTGT GGGGCAGCTT CTTCAGCCGT 
GACCCGAGCA AGACCCTGTT CCGCCGCCTG TGGTCACGCG TGGTGCTGGT GGCGGGTGCG 
CCCATACCCG CCGATGTGGC GACGCCGGTG GATGTGCGCG AAGAGGTGAA AGCGCTGAGA 
GGGAAAGTGC AGTAA 

 

Protein sequence

MSQQSQFSLL GKRRFLPFFI TQSLGAFNDN IFKQSLILAV LYKLSIDGDR SIYVNLCALL 
FILPFFLFSA LAGQFGEKYP KDKLIRIIKF AEIVVMAVGA AGFLFNHLEL MLAALFAMGT 
HSALFGPVKY SILPQHLRET ELVGGNALVE MGTFLAILAG TISAGVMMSS SHYGWIVSAA 
IVLVACLGFV ASFGIPNAAA ASPEMKLNWN IFTQSWATLR MGLGQTPAVS RSIVGNSWFW 
FVGAIYLTQI PAYAKEWMYG DETVVTLILT VFSVGIALGS LLCERLSGHK VEIGLVPFGS 
MGLTIFGLLL WWHSGGFPQN VQANDWLAIL SYGQGWLVLF DILGIGVFGG FYIVPLYALI 
QSRTPVKERS RVIAANNILN ALFMVVSAIV SILLLSFAKL SIPQLFLAIS LMNIAVNIYI 
FKIVPEFTMR FMIWLLGHSM YRVEHRDLNR IPDEGAALLV CNHVSFVDAL LIAGAVRRPI 
RFVMYYKIYQ LPVLNFIFRT AGTIPIAGRN EDMQIYEQSF KRIAQYLAEG ELVCIFPEGK 
LTTDGEINGF KNGMSRIIEQ TPVPVIPLAL QGLWGSFFSR DPSKTLFRRL WSRVVLVAGA 
PIPADVATPV DVREEVKALR GKVQ