| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3885 |
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| Symbol | prc |
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| ID | 1185556 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 4396500 |
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| End bp | 4398581 |
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| Gene Length | 2082 bp |
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| Protein Length | 693 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637395235 |
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| Product | tail-specific protease |
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| Protein accession | NP_793656 |
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| Protein GI | 28871037 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0793] Periplasmic protease |
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| TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.455139 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGCAAC TACTCCCCAG CACTGCCCTC GCACTGTTTG TCGGCCTTGG CGTATTGCCG
ATGTCAGCCA GTACTTTTGC CGCCAACAGC TGGGATAACC TTCAGCCGGA TCGCGACGAA
GTGATTGCCA GCCTCAACGT CGTTGAGCTG CTCAAGCGAC ATCACTACAG CAAGCCGCCC
CTGGACGACA AGCGTTCGGC CATTATTTAT CAAAGCTACA TCAAGCAACT GGACCCCTCG
CGCAGCTATT TCATGGCCAG CGATATTGCC GAATTCGACA AGTGGCAGTT CCAGTTCGAT
GACTTTCTGA AAAGTGGCGA CCTGAACCCG GGCTTCACCA TCTACAAGCG CTACCTGGAC
CGCATCAAGG CGCGTCTGGA CTTCGCGCTG GCTGAATTGA GCAAAGGCGT CGACAAGCTC
GACTTCAATA CCAAGGAAAC CCTGCTGGTG GACCGCAAGG ACGCCGCATG GCCCAAGGAC
ACGGCCGAGC TCGACGAACT GTGGCGCAAG CGCATCAAGG ATGAAGTCCT GCGCCTGAAG
ATCGCCGGCA AAGACCCGGC GAAGATTCAG GAAACCCTGA CCAAACGCTA CAAGAATCAG
CAGGCGCGCC TGAACCAGAC CCGCGCCGAA GATATCTTTC AGGCTTACAT CAATACCTTT
GCCATGTCTT ACGACCCGCA TACCAACTAC CTGTCACCGG ACAGCGCGGA GAACTTCGAC
ATCAACATGA GCCTGTCGCT GGAAGGCATC GGTGCTGTGT TGCAGAGCGA TAACGACAAC
GTGAAAATCG TGCGTCTGGT GCCGGCAGGT CCGGCGGCCA AGACCAAGCA GGTCGCCCCG
GCCGACAAGA TCGTCGCCGT TGCCCAGGGC GACAAGGAAA TGGTCGATGT GATCGGCTGG
CGCCTGGACG AAGTGGTCAA GTTGATCCGC GGTCCGAAAG GCTCCGTGGT GCGCCTGGAG
ATCATCCCGG CCAGCAATGC GCCGAATGAC CAGACCAGTA AAATCGTGGC CATCACCCGT
GAAGCGGTGA AACTTGAAGA GCAGGCGGCC AAGAAGTCGA TTCTGCACCT CAAACAGGAT
GGCAAGGACT ACAAGCTCGG CGTCATCGAC ATTCCCGCGT TCTATCTGGA CTTCAAGGCC
TACCGTGCAG GCGATCCGGA ATACAAGAGC ACCACCCGCG ACGTGAAGAA ACTGCTGACC
GAACTGCAGG CCGAGAAGGT CGACGGCGTG GTCCTGGATC TGCGCAACAA CGGTGGCGGC
TCGTTGCAGG AAGCGACCGA GCTGACCAGC CTGTTCATCG ACAAAGGTCC GACCGTGCTG
GTGCGTAACG CAGACGGCAA GGTCGATGTG CTGGAAGATG AAGCCAAGGG CGCGTTCTAC
AAAGGCCCGA TGGCATTGCT GGTCAACCGC TTGTCGGCGT CGGCGTCGGA GATTTTCGCG
GGTGCCATGC AGGACTACCA CCGCGCGCTG GTGATCGGTG GCCAGACCTT CGGCAAAGGC
ACCGTACAGA CCATTCAGCC GCTTAATCAC GGCGAACTGA AGCTGACCCT GGCCAAGTTC
TACCGCGTTT CCGGCCAGAG CACCCAGCAT CAGGGCGTGG TACCGGACAT CACTTACCCA
TCGCTGATCG ACACCAAGGA AATTGGTGAG AGTGCGCTGC CCGAGGCCAT GCCATGGGAC
AGCATCAAAC CGGCCATCAA GCCGGCGATC GATCCGTTCA AGCCGTTCCT GGCGCAGTTG
CAGTCACGTC ATGAAGCACG CTCGTCGAAA GACGCCGAGT TCGTGTTCAT CGAAGATCGC
CTTGCACTGG CCAAGAAGCT GATGAACGAG AAGACCGTCA GCCTCAATGA AGCCGACCGC
CGCGCCGAGC ACGCGTCCAT CGAAGGCAAG CAACTGGCGC TGGAAAACAC TCGCCGCAAG
GCCAAGGGTG AAGAGCCGCT CAAAGAGCTG AAAAAGGAAG ACGAAGACGC GCTGCCTGTC
GAAGACGAGA AGACCAAGCC CGAGGACGAT GCCTACCTGG CAGAGACCGG GCGTATTCTG
ATCGACTACC TGGGGTTGAG CGCTGCGGTC GCGAAAAAAT AA
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| Protein sequence | MKQLLPSTAL ALFVGLGVLP MSASTFAANS WDNLQPDRDE VIASLNVVEL LKRHHYSKPP
LDDKRSAIIY QSYIKQLDPS RSYFMASDIA EFDKWQFQFD DFLKSGDLNP GFTIYKRYLD
RIKARLDFAL AELSKGVDKL DFNTKETLLV DRKDAAWPKD TAELDELWRK RIKDEVLRLK
IAGKDPAKIQ ETLTKRYKNQ QARLNQTRAE DIFQAYINTF AMSYDPHTNY LSPDSAENFD
INMSLSLEGI GAVLQSDNDN VKIVRLVPAG PAAKTKQVAP ADKIVAVAQG DKEMVDVIGW
RLDEVVKLIR GPKGSVVRLE IIPASNAPND QTSKIVAITR EAVKLEEQAA KKSILHLKQD
GKDYKLGVID IPAFYLDFKA YRAGDPEYKS TTRDVKKLLT ELQAEKVDGV VLDLRNNGGG
SLQEATELTS LFIDKGPTVL VRNADGKVDV LEDEAKGAFY KGPMALLVNR LSASASEIFA
GAMQDYHRAL VIGGQTFGKG TVQTIQPLNH GELKLTLAKF YRVSGQSTQH QGVVPDITYP
SLIDTKEIGE SALPEAMPWD SIKPAIKPAI DPFKPFLAQL QSRHEARSSK DAEFVFIEDR
LALAKKLMNE KTVSLNEADR RAEHASIEGK QLALENTRRK AKGEEPLKEL KKEDEDALPV
EDEKTKPEDD AYLAETGRIL IDYLGLSAAV AKK
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