| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3881 |
|---|
| Symbol | |
|---|
| ID | 1185552 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 4392857 |
|---|
| End bp | 4393654 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637395231 |
|---|
| Product | polyamine ABC transporter, permease protein, putative |
|---|
| Protein accession | NP_793652 |
|---|
| Protein GI | 28871033 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.606059 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCGCG CTGAACGAAG GCCCGCGGGC ATTTACCACA AGTCCGTGGT TTACCTGTTG
TTCCTGATCC TGTTGCTGCC GCTGGCCGGG ACCTTTCTGT ACTCGATTTC CACCAGTTGG
TCGGCGACCA TTCTGCCCAG CGGCCTGACC TTCAAGTGGT ACGTGGCGCT GTGGAGCGAC
CCGCGTTTTC TGGCAGCATT CGGCCAGTCG TTGCTGGTTT GCGTCGGTGC GTTGATCCTG
TCGGTGGTGC TGATACTGCC GCTGCTGTTC GTGGTGCACT ACTACTTTCC GCGCCTCGAC
GGGCTGATGA ACATCCTGAT TCTGCTGCCG TTCGCGGTGC CGCCGGTGGT GTCGTCGGTA
GGCTTGCTGC AACTCTACGG CTCAGGGCCG ATGGCCATGG TCGGCACGCC GTGGATTCTG
ATCGGCTGCT ATTTCACCGT TGCCCTGCCC TTCATGTACC GCGCCATCAC CAATAACCTG
CAGGCCATCA ACCTGACCGA CCTGATGGAC GCCGCCCAAC TGCTCGGGGC CAGTACCTGG
CAAGCGGCGT TTCTGGTGGT GCTGCCCAAC TTGCGCAAAG GCCTGATGGT TGCATTGCTG
TTGTCGTTCT CCTTTCTGTT CGGCGAGTTC GTGTTCGCCA ACCTGCTGGT CGGCACCCGC
TACGAAACCC TGCAGGTGTA CCTGAACAAC ATGCGCAACA GCAGCGGTCA CTTCAACAGC
GCGCTGGTGA TCTCTTATTT CCTCTTCGTG CTGGTGCTGA CCTGGGCCGC CAATCGACTG
AACAAGGACA AAGACTGA
|
|---|
| Protein sequence | MSRAERRPAG IYHKSVVYLL FLILLLPLAG TFLYSISTSW SATILPSGLT FKWYVALWSD
PRFLAAFGQS LLVCVGALIL SVVLILPLLF VVHYYFPRLD GLMNILILLP FAVPPVVSSV
GLLQLYGSGP MAMVGTPWIL IGCYFTVALP FMYRAITNNL QAINLTDLMD AAQLLGASTW
QAAFLVVLPN LRKGLMVALL LSFSFLFGEF VFANLLVGTR YETLQVYLNN MRNSSGHFNS
ALVISYFLFV LVLTWAANRL NKDKD
|
|---|
| |