| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3880 |
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| Symbol | |
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| ID | 1185551 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 4392028 |
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| End bp | 4392870 |
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| Gene Length | 843 bp |
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| Protein Length | 280 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637395230 |
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| Product | polyamine ABC transporter, permease protein, putative |
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| Protein accession | NP_793651 |
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| Protein GI | 28871032 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4132] ABC-type uncharacterized transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.43307 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGACCCGAT TTTCCCGAGG CAAATGGCTG GGGCTGTTGT GCCTGCTGCC CTTTGCCGTG
TTTTTCATCG TATTTCAGAT AGCGCCGCTG CTCTGGGTGG CGATCCACAG CCTGCAAAGC
GATGCCGGCT GGGGCTGGGA AAACTTTACC AGGGCGTTCA GCTCGAAGTT CTACCGTCAG
GCGATCCAGT ACAGCCTGGA GATCAGCTTC TGGTCGAGCC TGTTCGGCAT CATCATCTCC
GTGCTGGGCG CCTATTCGCT GCGCAAGGTG GACTCGCGGC TGCGCGACTT CGTCAACTCG
TTCGCCAACA TGACCAGCAA CTTTGCCGGC GTTCCACTGG CATTTGCCTT CATTATCCTG
CTGGGCTTCA ACGGCGCACT GACCCTGATC CTCAAGCAGA CCGGAATCAT TGATGACTTC
AACCTGTATT CCAAGACCGG GCTGATCATC CTTTACACCT ACTTTCAGAT CCCGCTTGGC
GTGCTGCTGC TCTACCCGGC ATTCGATGCC GTGCGCGAGG ACTGGAACGA GTCGGCGGCG
CTGTTGGGGG CCAGCAGTTA TCAGTTCTGG CGCTACATTG GCCTGCCGGT ATTGACTCCG
GCGCTGCTCG GCACGTTTGT GATTCTGCTG GCCAATGCGC TGGGCGCCTA CGCCACGGTA
TATGCCCTGA CCACCGGCAA CTTCAACGTG CTGCCGATCC GCATTGCCGC GATGGTGGCA
GGCGATATTA CTCTGGACCC GAACATGGCC AGTGCCCTGG CGATGATTCT GGTCGGGCTC
ATGACCCTGG TGACGGTGGT CCATCAGTGG CTGTTGAAGA GGAGCTACCA TGTCTCGCGC
TGA
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| Protein sequence | MTRFSRGKWL GLLCLLPFAV FFIVFQIAPL LWVAIHSLQS DAGWGWENFT RAFSSKFYRQ
AIQYSLEISF WSSLFGIIIS VLGAYSLRKV DSRLRDFVNS FANMTSNFAG VPLAFAFIIL
LGFNGALTLI LKQTGIIDDF NLYSKTGLII LYTYFQIPLG VLLLYPAFDA VREDWNESAA
LLGASSYQFW RYIGLPVLTP ALLGTFVILL ANALGAYATV YALTTGNFNV LPIRIAAMVA
GDITLDPNMA SALAMILVGL MTLVTVVHQW LLKRSYHVSR
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