Gene PSPTO_3878 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3878 
Symbol 
ID1185549 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp4390080 
End bp4391147 
Gene Length1068 bp 
Protein Length355 aa 
Translation table11 
GC content57% 
IMG OID637395228 
ProductABC transporter, periplasmic substrate-binding protein 
Protein accessionNP_793649 
Protein GI28871030 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1840] ABC-type Fe3+ transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.405488 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACATC TTTTGTTGGC ATCACTCCTC GGTTCAGCCA TGGCAATGAG TTCTTTGGTC 
ATGGCTGCGG ACACAGATCT TAAAACGCTG GAAGCGGCGG CCAAGGCCGA AGGCGCGGTC
AACAGCCTCG GCATGCCGGA TGACTGGGCG AACTGGGGCG GCATCTGGAA AGACCTGGAA
GCCAAATACG GCCTCAAGCA CATGGACACA GACATGAGTT CGGCCCAGGA GATCGCCAAG
TTCGAGGCTG AGAAAGACAA CGCCAGCGGT GACATCGGCG ACGTCGGCGC TGCGTTCGGT
CCCATAGCGA CCGCAAAAGG TGTGACCCAA CCCTACAAGC CAACCACCTG GGAGCAGATT
CCGGACTGGG CCAAGGACAA GGAAGGCCAC TGGGCGCTGG CCTACACCGG CACCATCGCC
TTTATCGTCA ACAAGAACCT GCTGCACGGC TCTGAAATTC CAAAAAGCTG GGCTGACCTG
AAAACCGGCA AATACAAAGT CTCGATTGGT GACGTGAGCA CCGCCGCGCA AGCCGCAAAC
GGCGTGCTGG CCGCTTCTTT CGCCATGAAA GGCGATGAAA GCAACATAGA GCCAGGCCTG
GCACTGTTCA CCGATCTGGC CAAGCAGAAA CGCCTGTCGC TGGCCAACCC GACCATTCAG
ACCATCGAAA AAGGCGAAAT CGAAGTCGGC GTGGTCTGGG ACTTCAACGG CCTGAGCTAC
CGGACCAAGA TGGCCAAACC GGATGACTAC GTGGTGCTGA TCCCGTCGGA CGGTTCGGTG
ATTTCCGGTT ACACCACCAT CATCAACAAA TACGCCAAGC ACCCGAACGC CGCCAAACTG
GCGCGTGAAT ACACCTTCAG CGATGCCGGT CAGATCAACC TGGCCCGTGG TCATGCACGC
CCGATTCGTG CCGAGCACAT CAAGCTTCCT GAAGACGTAC AAGCCAAGTT GCTGCCGCAC
GAACAGTACA AGAACGTAAC ACCGATCAAA GATGCAGCAG CCTGGGAAAA GACTTCCAAG
GCCCTGCCTC AGAAGTGGAA CGAACAAGTC ATCATCGAGA TGAACTGA
 
Protein sequence
MKHLLLASLL GSAMAMSSLV MAADTDLKTL EAAAKAEGAV NSLGMPDDWA NWGGIWKDLE 
AKYGLKHMDT DMSSAQEIAK FEAEKDNASG DIGDVGAAFG PIATAKGVTQ PYKPTTWEQI
PDWAKDKEGH WALAYTGTIA FIVNKNLLHG SEIPKSWADL KTGKYKVSIG DVSTAAQAAN
GVLAASFAMK GDESNIEPGL ALFTDLAKQK RLSLANPTIQ TIEKGEIEVG VVWDFNGLSY
RTKMAKPDDY VVLIPSDGSV ISGYTTIINK YAKHPNAAKL AREYTFSDAG QINLARGHAR
PIRAEHIKLP EDVQAKLLPH EQYKNVTPIK DAAAWEKTSK ALPQKWNEQV IIEMN