Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3878 |
Symbol | |
ID | 1185549 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 4390080 |
End bp | 4391147 |
Gene Length | 1068 bp |
Protein Length | 355 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637395228 |
Product | ABC transporter, periplasmic substrate-binding protein |
Protein accession | NP_793649 |
Protein GI | 28871030 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1840] ABC-type Fe3+ transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.405488 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACATC TTTTGTTGGC ATCACTCCTC GGTTCAGCCA TGGCAATGAG TTCTTTGGTC ATGGCTGCGG ACACAGATCT TAAAACGCTG GAAGCGGCGG CCAAGGCCGA AGGCGCGGTC AACAGCCTCG GCATGCCGGA TGACTGGGCG AACTGGGGCG GCATCTGGAA AGACCTGGAA GCCAAATACG GCCTCAAGCA CATGGACACA GACATGAGTT CGGCCCAGGA GATCGCCAAG TTCGAGGCTG AGAAAGACAA CGCCAGCGGT GACATCGGCG ACGTCGGCGC TGCGTTCGGT CCCATAGCGA CCGCAAAAGG TGTGACCCAA CCCTACAAGC CAACCACCTG GGAGCAGATT CCGGACTGGG CCAAGGACAA GGAAGGCCAC TGGGCGCTGG CCTACACCGG CACCATCGCC TTTATCGTCA ACAAGAACCT GCTGCACGGC TCTGAAATTC CAAAAAGCTG GGCTGACCTG AAAACCGGCA AATACAAAGT CTCGATTGGT GACGTGAGCA CCGCCGCGCA AGCCGCAAAC GGCGTGCTGG CCGCTTCTTT CGCCATGAAA GGCGATGAAA GCAACATAGA GCCAGGCCTG GCACTGTTCA CCGATCTGGC CAAGCAGAAA CGCCTGTCGC TGGCCAACCC GACCATTCAG ACCATCGAAA AAGGCGAAAT CGAAGTCGGC GTGGTCTGGG ACTTCAACGG CCTGAGCTAC CGGACCAAGA TGGCCAAACC GGATGACTAC GTGGTGCTGA TCCCGTCGGA CGGTTCGGTG ATTTCCGGTT ACACCACCAT CATCAACAAA TACGCCAAGC ACCCGAACGC CGCCAAACTG GCGCGTGAAT ACACCTTCAG CGATGCCGGT CAGATCAACC TGGCCCGTGG TCATGCACGC CCGATTCGTG CCGAGCACAT CAAGCTTCCT GAAGACGTAC AAGCCAAGTT GCTGCCGCAC GAACAGTACA AGAACGTAAC ACCGATCAAA GATGCAGCAG CCTGGGAAAA GACTTCCAAG GCCCTGCCTC AGAAGTGGAA CGAACAAGTC ATCATCGAGA TGAACTGA
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Protein sequence | MKHLLLASLL GSAMAMSSLV MAADTDLKTL EAAAKAEGAV NSLGMPDDWA NWGGIWKDLE AKYGLKHMDT DMSSAQEIAK FEAEKDNASG DIGDVGAAFG PIATAKGVTQ PYKPTTWEQI PDWAKDKEGH WALAYTGTIA FIVNKNLLHG SEIPKSWADL KTGKYKVSIG DVSTAAQAAN GVLAASFAMK GDESNIEPGL ALFTDLAKQK RLSLANPTIQ TIEKGEIEVG VVWDFNGLSY RTKMAKPDDY VVLIPSDGSV ISGYTTIINK YAKHPNAAKL AREYTFSDAG QINLARGHAR PIRAEHIKLP EDVQAKLLPH EQYKNVTPIK DAAAWEKTSK ALPQKWNEQV IIEMN
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