Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3848 |
Symbol | |
ID | 1185519 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 4355091 |
End bp | 4357307 |
Gene Length | 2217 bp |
Protein Length | 738 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637395199 |
Product | DNA internalization-related competence protein ComEC/Rec2 |
Protein accession | NP_793620 |
Protein GI | 28871001 |
COG category | [R] General function prediction only |
COG ID | [COG2333] Predicted hydrolase (metallo-beta-lactamase superfamily) |
TIGRFAM ID | [TIGR00360] ComEC/Rec2-related protein [TIGR00361] DNA internalization-related competence protein ComEC/Rec2 |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCTCAG GGATGATCGC GCTCGCGTTG GGGCTGGTGG CCCTGCGCTT TCTGCCGGTT TTGCCGCCGA TCTGGCTCTT GTTGCTAATG CCGATACTGG CGTTGATGCT GCTGCCGTTT CGCACCTATC CACTGGCGCT GTTCCTGCTC GGCTTCACGT GGGCGTGCGT TTCGGCGCAG TGGGCGTTGA AAGACCGTTT GCAGCAACGG CTGGACGGCC AGACACTGTG GCTGCAAGGC AAAGTGGCCG GTTTGCCGAG CGTTGCCGAG GGCGTGGTGC GTTTCGAGCT GGAACACGCC ACGTCGCGGC GGGCGAAGCT GCCTGCGCTG ATCCGTGTGG CGTGGTACGG CGGCCCTGAG GTGCGCAGCG GCGAGCGCTG GCGACTGGCG GTAAAGCTCA AGCGCCCCGG CGGGCTGGTC AACCCTGATG CTTTCGATTA TCAGGCCTGG CTGCTGGCAC AGCGCATCGG CGCGACCGGT ACGGTGGTGG ACGGTCGAAG GCTGGCGCCC GCGCATGCGG CCTGGCGCGA CGGTATTCGT CAGCGTTTGC TGGCGGTTGA TGCACAGGGC AGGGAAGGCG GGCTGGCCGC GCTGGTGCTG GGCGATGGCT CGGGGTTGTC GAGTGGCGAC TGGCAGGTGC TGCAAGACAC CGGCACCGTG CACCTGCTGG TGATTTCCGG TCAGCATATC GGCTTGCTTG CTGGCGTGAT TTACGCGTTG GTCGCAGGTC TCGCCCGCTG GGGACTGTGG CCACGGGCTT TGCCCTGGCT GCCCTCGGCC TGTGCGCTGG CGTTCATTGC TGCGCTGGGC TACGGATTGC TGGCCGGTTT CGAGGTGCCG GTGCGGCGCG CCTGTGTGAT GGTCGGCATG GTATTGCTGT GGCGTTTGCG CTTTCGGCAT CTGGGCGTGG TCTGGCCGTT TTTGATTTCC TTCAACGCGG TGCTGATCGT TGAGCCGTTG GTGACGTTGC AGCCGGGTTT CTGGCTGTCT TTTGCAGCGG TCGGCATTCT GGTACTGATT TTCAGTGGCC GTCTGGGTAG CTGGAGCTGG TGGCAGAGCT GGACGCGCGC GCAGTGGCTG ATCGCAATCG GCTTGTTGCC GATTTTGCTG GCGCTGAACC TGCCGATCAG CCTCAGCGGC CCGTTTGCCA ACCTGCTCGC GGTGCCTTGG GTCAGTGTGA TCGTCCTGCC GCCAGCACTG ATCGGCACGT TGCTGCTGCC GGTCCCCGTT GTTGGCGAGG GCCTGCTCTG GCTGGCGGGA GGCGCGCTGC AATGGCTGTT CGTGTTTCTC GGTTGGGTGG CCGAGGCCTT GCCCGCCTGG CTGCCCAGTG CGGTGCCTGG CTGGGCATGG CTGTTGAGTC TGCTCGGGGC CTTTGTTTTA TTGCTGCCCA AAGGTGTGCC GCTGCGCCTG TTGGGCTGGC CATTGTTGTT GCTGTGCGTG TTTCCGCCGC TCAAGTCTGT GCCGATGGGG CAGGTCGAGG TGTTGCAACT GGACGTGGGG CAGGGGCTGG CGATTCTGCT GCGCACCCGC AATCACACAC TGCTCTACGA TGCAGGGCCG CGTTTCGGTG AGTTCGATAT CGGCCAACGG GTGGTCGTGC CGGCGATGCG CAAGTCCGGT GTTCGTCACT TGGATCTGAT GCTGATCAGC CATGCCGATG CGGATCATGC CGGCGGGGCG GCAGCGGTTC ATCGGGCATT TCCGGTGAAC CGCGTGCTGG GCGGGGAACT GACCCGGCTC GCCCCGCAAC TCGATGCCCG GCTGTGTGAG AACAACGAGC GCTGGGAATG GGATGGCGTG GTGTTTTCCA CCTGGCGCTG GGAGCAGGCG CCCAACGGTA ATGCCGGGTC CTGCATGCTG AGCGTCGACG CCGGTGGTGA GCGTCTGCTG CTGACGGGCG ACATTGATGT GCACGCCGAG TGTGCGGCAA TGGACAGCGG TTTTGACCTT CGTGCCCACT GGTTGCAGGC TCCGCATCAC GGCAGCCGCA GTTCATCCTC CAAAGTGTTT CTGCAGGCGG TTGCGCCGCT GGGCGTGCTC ATTTCCCGCG GGCAGAACAA TGCCTTCGGT CATCCGCATC CGTTGGTCAT GTCGCGGTAC CGATGGTTGG GAATTACCCA CCATGACAGC GCCGAACTAG GTGCCATCAG TCTGCAACTG GGGGCGTTCG GCCAGCCTCG GGCGGAGCGG GCTCAGCGGC GTTTCTGGCG TGACTGA
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Protein sequence | MRSGMIALAL GLVALRFLPV LPPIWLLLLM PILALMLLPF RTYPLALFLL GFTWACVSAQ WALKDRLQQR LDGQTLWLQG KVAGLPSVAE GVVRFELEHA TSRRAKLPAL IRVAWYGGPE VRSGERWRLA VKLKRPGGLV NPDAFDYQAW LLAQRIGATG TVVDGRRLAP AHAAWRDGIR QRLLAVDAQG REGGLAALVL GDGSGLSSGD WQVLQDTGTV HLLVISGQHI GLLAGVIYAL VAGLARWGLW PRALPWLPSA CALAFIAALG YGLLAGFEVP VRRACVMVGM VLLWRLRFRH LGVVWPFLIS FNAVLIVEPL VTLQPGFWLS FAAVGILVLI FSGRLGSWSW WQSWTRAQWL IAIGLLPILL ALNLPISLSG PFANLLAVPW VSVIVLPPAL IGTLLLPVPV VGEGLLWLAG GALQWLFVFL GWVAEALPAW LPSAVPGWAW LLSLLGAFVL LLPKGVPLRL LGWPLLLLCV FPPLKSVPMG QVEVLQLDVG QGLAILLRTR NHTLLYDAGP RFGEFDIGQR VVVPAMRKSG VRHLDLMLIS HADADHAGGA AAVHRAFPVN RVLGGELTRL APQLDARLCE NNERWEWDGV VFSTWRWEQA PNGNAGSCML SVDAGGERLL LTGDIDVHAE CAAMDSGFDL RAHWLQAPHH GSRSSSSKVF LQAVAPLGVL ISRGQNNAFG HPHPLVMSRY RWLGITHHDS AELGAISLQL GAFGQPRAER AQRRFWRD
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