Gene PSPTO_3822 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3822 
Symbol 
ID1185493 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp4331281 
End bp4331940 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content57% 
IMG OID637395174 
Producttranscriptional regulator, TetR family 
Protein accessionNP_793595 
Protein GI28870976 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.526815 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGAAAG AACCTCGTAA GGTCCGTGAA TTTCGCCGCC GTGAGCAGGA AATTCTCGAC 
ACCGCGCTCA AGCTGTTCCT GGAGCAGGGC GAAGACAGCG TCACTGTCGA AATGATTGCG 
GACGCCGTCG GCATTGGCAA AGGCACCATC TACAAGCACT TCAAGTCCAA GGCGGAAATC 
TACCTGCGCC TGATGCTCGA CTACGAGCGG GATTTGAATG AGCTGCTGCA TTCTGCCGAT 
GTCGACAAGG ACAAAGAGGC GCTTTCGCGT GCCTATTTCG AATTCCGCAT GCGTGATCCT 
CAGCGCTACC GCCTGTTTGA TCGCCTGGAA GAAAAGGTGG TCAAGGGCAA TCAGGTGCCT 
GAGCTGGTCG AGGAGCTGCA CAAGATCCGC GCCTCCAACT TCGAGCACCT GACGCTGCTG 
ATCAAAGGTC GCATCACCGA AGGCAAACTC GAAGACGTCC CGCCTTACTA CCACTACTGT 
GCCGCTTGGG CGCTGGTGCA CGGCGCGGTT GCGCTGTACC ACTCGCCGTT CTGGAGCAAC 
GTGCTGGAAG ATCAGGAAGG CTTCTTCAAT TTCCTCATGG ACATCGGCGT ACGCATGGGC 
AACAAGCGCA AGCGCGACAC CGACGTCCCT GCAGAGCCCA AGCCTGACCC TGACGTCTGA
 
Protein sequence
MQKEPRKVRE FRRREQEILD TALKLFLEQG EDSVTVEMIA DAVGIGKGTI YKHFKSKAEI 
YLRLMLDYER DLNELLHSAD VDKDKEALSR AYFEFRMRDP QRYRLFDRLE EKVVKGNQVP 
ELVEELHKIR ASNFEHLTLL IKGRITEGKL EDVPPYYHYC AAWALVHGAV ALYHSPFWSN 
VLEDQEGFFN FLMDIGVRMG NKRKRDTDVP AEPKPDPDV