| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3818 |
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| Symbol | |
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| ID | 1185489 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4325920 |
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| End bp | 4328763 |
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| Gene Length | 2844 bp |
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| Protein Length | 947 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637395170 |
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| Product | hypothetical protein |
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| Protein accession | NP_793591 |
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| Protein GI | 28870972 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3170] Tfp pilus assembly protein FimV |
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| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.899071 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTCAGG TTCGTAAACT GGTATTAGCA ATCGCTGCGG CTTCAGCGCT GTCATCGGGT
ATGGCGCAGG CGCTGGGGCT CGGGGAATTG TCGGTCAAGT CGACCCTGAA TCAGCCATTG
GTAGCGGAAA TCGAGTTGAC CGATGCGCAG GGGCTCAACG CAGCGCAAGT TGTGCCGAGC
CTTGCAACCA CGGCCGATTT TGCGCAGTTG GGTGTCTCCC GCCAGGAACT GCTAAACGAC
CTGACGTTCA CTCCGGTGAT CGACCCCAAC GGCAGAAGCG TGTTGCGGAT TACGTCCAGC
AAGCCTGTGC GCGTCCCTTA TGTGAAGTTT CTGGTTCAAG TGCTCTGGCC CAATGGCCGG
TTGGTGCGTG ACTACAGCCT TCTGCTCGAC CCGCCGAAGT ATTCGCCTGA AGCCGCTGCA
GCGGCAGCCG CTCCGGCCCC TGCGCCAGCA GCGGCCCCGG CAGCGCCTGC GCAACTGGCG
ACAGTGGCAC CGTCAACAGA GGCTGCGGCA CCCCAGGCTC CAGCCCCGGC ACCTGCCGCT
ACCCCCGCCG CAGTGCCGGC ACCTGCCGCT GACAAGCAGG CTCAATACGT CACCGCCAAC
AACGATACCC TGTGGGAAAT TGCCGCGAAG GTGCGTACCG GTGGGACTGT TCAGCAAACC
ATGCTGGCGA TTCAGGCGCT TAATCCGGAT GCTTTCATGG GCGGCAACAT CAACCGCCTG
AAAAAGGGTC AGGTGCTGCG CCTGCCGACC CCGCAGCAGA CCACCGCACT GCCACAGCCG
CAGGCGATTG CCGAGGTTTC CCGTCAATAC AGCGCCTGGC GTGAAGGTCG GCGTTTGCCG
ACCGGTACGC GTCAGGTCGA TGCCACCCGG CGTGATCGGG CCGGTGCGGC GCCTTCAAAG
GTTGATACTT CCGATAATCT CAGCCTGGTC TCGGCAGGTG GCAAACCGGC CGCCAAAGGT
GGGGCGGGCG ACGCTGACCT GGGCAATAAG CTGGCCGTGG CACAGGAAGC GCTCGATACC
ACGCGCCGTG ACAATGCCGA GCTGAAAAGC CGCATGAACG ACCTGCAAAG CCAGCTTGAC
AAGCTACAGC GTCTGATCGA GCTGAAAAAC GGTCAACTGG CCAAAATGCA GGCCGCCGGA
GCAGCGGTTC CGCCTGTGGC AGCAACCCCT GAAGCTACGA CCCCGGCCAA TGCGGCAGTG
CCTGCTTCGC TGGTCGATGC CAATGGTGCT CCGGTCAAGC CGGCTGGCGA AATCGCCCCG
GAAGACGCGT TGCCGGCAGG TGCTGCCCAG GTTGCAACAC CTGCGGCGGA TCAGCCACTG
GCCGTTGAGC CTGTGGCCGC TACCGAAGAT GACGACATGC TGCAAAAGGC ACTCGACAAC
CCGATATTGC TGGGGTTGAT CGGCGGTGCT GCGTTGTTGA TTCTGGCCTT GCTGTTGTTG
TTTCTGGCGC GTCGTCGTGC GGCGAAAGCG GAAGCCGAAA AACACAAGCG CATGGCACGA
GCGCTGGCTG AAGAATCCGA TTTCGTTTCA GACATGGACA TGGACGCACC GCAAGCCAGC
TTCGACGGGC TTGACGTGCC GCCGCCCAAT GTTCGTATGG GCGCAGGTGC TGCTGCCGGA
GCCGCCGCTG CTCGCGAGCG TTCGGCTGAT CCGCTGGTGC AGGCCGAGAT CCATATTGCT
TACGGGCGTA TGAATCAGGC TGTCGAACTG CTCGAGGAAG CGGTCAAGGA CGATCCGGCG
CGCGATGATA TTCGCCTCAA GCTGATGGAA ATCTATGCTG AACAAGGCAA TAACAAAGCC
TACGCCGCGC ATGAGCGCAA GCTGGTGGCT GCGGGAAAGC GTGAAGCTGA GGTCGAGCAG
CTGGAAGAAC GTCACTCGAC CCTGAAGCCT GTTGCACCGG TTGTCTTGCC GGTCGCGCCG
CAGGCTTCTG AACCTGCCCC TGCACCTGCG TCGGCTGCCC CTGCAGTTGC CGCCGCGGCA
GTAGCAGCCA GTGCGGCTGC ATTGGCGGCG GAGCTTGATG CCAAATATGT AGAAGAGTTG
CTGGCCGATG ACTCGGCTGA ACAGCCGCCT GAGCCGGTTG CCGAGCCTGA ACCTGTTGTG
GTCCCTGAGC CCGAGCCGCT GGCCGCTGCG CCTGTCGAGG AAGAGGACCC GTTCGATCAT
GACTTTGATC TTAGCCTGGA CGAGTTCGAT GAAACGACCA CGCCGCAAGT CTCCACGGTC
GACAATCTTG ATGATCTGAT GCTGGACGAG CCCGCGCTGT CGGCGGTGCC TGACGATGAG
CCGTTGAGCT TCGAGTCGAT CATGCAGCAG CAGGAAGAGG CCCGGGCCGC GACGACGCCT
GAAGACCTTG CCGATTTTGA CCTGGATCTT TCCGAAGAGG ATCCTGCGCT CAAGAACGAG
GACGACTTCC TGCTGGGCCT TGGCAGTGAG CCGCTTGATC TGGGCGAAAC AAAGCCTGTA
CCGCCGATCA GCGACGATCT GGAGCTTCCC GAAGACTTCG ATCTTTCGCT GGCAGACGAG
ATTGAAACCG ATCAGGCCAG CCAGGCGTTC GCCACCGAAA TCGACGACGT CAACGCCGAA
CTGGACCGTC TTGCGCAAAA TCTTGAGCAT CCGCCGCTGG ATGAGCCAAG GTTCACCGCC
GAAGATGCAG CGGCACTGGA TGACGAGCCG GACTTCGACT TCATGGCCGG TACCGACGAA
GCGGCAACCA AGCTCGATCT GGCGCGTGCC TACATCGACA TGGGTGATGC GGACGGTGCT
CGTGACATTC TTGATGAAGT GGTCACCGAG GGCGATGACG GGCAGAAAAG CGAAGCGCGG
GAGATGCTTT CGCGGCTGGC GTGA
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| Protein sequence | MVQVRKLVLA IAAASALSSG MAQALGLGEL SVKSTLNQPL VAEIELTDAQ GLNAAQVVPS
LATTADFAQL GVSRQELLND LTFTPVIDPN GRSVLRITSS KPVRVPYVKF LVQVLWPNGR
LVRDYSLLLD PPKYSPEAAA AAAAPAPAPA AAPAAPAQLA TVAPSTEAAA PQAPAPAPAA
TPAAVPAPAA DKQAQYVTAN NDTLWEIAAK VRTGGTVQQT MLAIQALNPD AFMGGNINRL
KKGQVLRLPT PQQTTALPQP QAIAEVSRQY SAWREGRRLP TGTRQVDATR RDRAGAAPSK
VDTSDNLSLV SAGGKPAAKG GAGDADLGNK LAVAQEALDT TRRDNAELKS RMNDLQSQLD
KLQRLIELKN GQLAKMQAAG AAVPPVAATP EATTPANAAV PASLVDANGA PVKPAGEIAP
EDALPAGAAQ VATPAADQPL AVEPVAATED DDMLQKALDN PILLGLIGGA ALLILALLLL
FLARRRAAKA EAEKHKRMAR ALAEESDFVS DMDMDAPQAS FDGLDVPPPN VRMGAGAAAG
AAAARERSAD PLVQAEIHIA YGRMNQAVEL LEEAVKDDPA RDDIRLKLME IYAEQGNNKA
YAAHERKLVA AGKREAEVEQ LEERHSTLKP VAPVVLPVAP QASEPAPAPA SAAPAVAAAA
VAASAAALAA ELDAKYVEEL LADDSAEQPP EPVAEPEPVV VPEPEPLAAA PVEEEDPFDH
DFDLSLDEFD ETTTPQVSTV DNLDDLMLDE PALSAVPDDE PLSFESIMQQ QEEARAATTP
EDLADFDLDL SEEDPALKNE DDFLLGLGSE PLDLGETKPV PPISDDLELP EDFDLSLADE
IETDQASQAF ATEIDDVNAE LDRLAQNLEH PPLDEPRFTA EDAAALDDEP DFDFMAGTDE
AATKLDLARA YIDMGDADGA RDILDEVVTE GDDGQKSEAR EMLSRLA
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