Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3778 |
Symbol | |
ID | 1185446 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 4280584 |
End bp | 4281606 |
Gene Length | 1023 bp |
Protein Length | 340 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637395128 |
Product | BNR/Asp-box repeat protein |
Protein accession | NP_793552 |
Protein GI | 28870933 |
COG category | [R] General function prediction only |
COG ID | [COG4447] Uncharacterized protein related to plant photosystem II stability/assembly factor |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTGAGC CTTTCCACTG GCGCACTCGG TTATGCACGG GCATGTCCCT GGTGATCTTT ACGTGCTGCT CGTTTGCCGA TTCGGCTCCC GTTGCCGCTG CGGACACCGC CGCGTATGCC GTCGAATCAG CCAAAGCCTC ACGCGGCCTG TTGCTGGATG TCGCCCATGC CGGTGCACGC CTGGTCGCAG TGGGTGATCA CGGGCATATT CTGTATTCCG ATGACCAGGG CAAGACCTGG AGCCAGGCCC GAGTGCCGAC CCGCCAGCTA CTGACGGCGG TGTTCTTCGT CGATGAGCAG CACGGTTGGG CGGTCGGCCA CGATGCGCAA ATCCTCGCCA GCAGCGATGG CGGCAAAAGC TGGAACAAAC AGTTCGAGGA CTTGAAGCGC GAAGCACCGT TGCTGGATGT CTGGTTCAAG GACCTCAACA ACGGTTTCGC CATTGGCGCG TATGGCGCGT TGCTCAACAC CGGCGACGGC GGCCGGCATT GGCAGGACGT CAGCGACCGG CTGGACAACG AAGACCAGTA CCACCTGAAC GGTATCGCTC AGATAAAAGA CGCAGGGCTG TTTATCGTCG GTGAAGCGGG CAGCATGTTT CGTTCTCGCG ACGAGGGGCA AACCTGGGAA AAGCTCGAAG GTCCTTATCA GGGCTCGTTG TTTGGCGTCG TCGGCACCGC GCAGCCTGCC ACGTTGCTGG CTTACGGTCT GCGCGGCAAC CTGTTTCGCT CCAGTGATTT TGGTGACACC TGGCAACCCA TCGAACTGAA CGGCGCACGC GGGCCGGTCG AGTTCGGTCT GGCCAGCGCC ACGTTGCTGA CCGATGGCAC ATTGGTGCTG GTCGGCAACG GCGGCAGTGT CATGCGCAGC ACTGATGACG GTGAGACATT CGAGGTCTTC AACCGCCCCG ATCGCATTTC GCTGGCGGGA GTCACCGCTA ATCTTCAAGG CAATCTGATT CTGGTAGGAC AGGGCGGCGT ACGCGTCACC TCGCCGACGG GCGCCGAGAC GACCCAACAA TAA
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Protein sequence | MREPFHWRTR LCTGMSLVIF TCCSFADSAP VAAADTAAYA VESAKASRGL LLDVAHAGAR LVAVGDHGHI LYSDDQGKTW SQARVPTRQL LTAVFFVDEQ HGWAVGHDAQ ILASSDGGKS WNKQFEDLKR EAPLLDVWFK DLNNGFAIGA YGALLNTGDG GRHWQDVSDR LDNEDQYHLN GIAQIKDAGL FIVGEAGSMF RSRDEGQTWE KLEGPYQGSL FGVVGTAQPA TLLAYGLRGN LFRSSDFGDT WQPIELNGAR GPVEFGLASA TLLTDGTLVL VGNGGSVMRS TDDGETFEVF NRPDRISLAG VTANLQGNLI LVGQGGVRVT SPTGAETTQQ
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