| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3757 |
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| Symbol | |
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| ID | 1185425 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4249716 |
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| End bp | 4254572 |
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| Gene Length | 4857 bp |
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| Protein Length | 1618 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637395107 |
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| Product | hypothetical protein |
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| Protein accession | NP_793531 |
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| Protein GI | 28870912 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2902] NAD-specific glutamate dehydrogenase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.633867 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGTTCT TCACCGCAGC CAGCAAGTCC GACTTCCAGC ATCAACTGCA AGCGGCACTG
GCTCAGCACA TCAGCGAACA GGCACTGCCA CAAGTGGCGC TGTTTGCCGA GCAATTCTTC
GGCATCATTT CCCTCGACGA ACTCACCCAG CGGCGTCTGT CCGACCTGGC AGGCTGCACC
TTGTCCGCGT GGCGTCTGCT GGAGCGTTTC GAACACGCTC ACCCGCAGGT GCGCGTCTAC
AACCCTGATT ACGAGCGCCA CGGCTGGCAG TCGACTCATA CTGCCGTCGA AGTGCTGCAT
CACGACCTGC CGTTTCTGGT CGACTCCGTA CGCACCGAGC TGAACCGTCG CGGTTACAGC
ATCCACACCT TGCAAACCAC CGTGTTGAGC GTGCGCCGCG GCGCGAACGG CGAGTTGCTG
GAGCTGCTGC CCAAGGGCGC CACCGGCGAA GACGTGCTGC AGGAATCGCT GATGTACCTG
GAGATCGACC GCTGCGCCAG TGCCAGCGAG TTGAACGTGC TGGCTCGCGA GCTGGAGCAG
GTGCTCGGCG AGGTGCGGGT CGCGGTAGAA GATTTTGCGC CGATGAAAGC GCGTCTGCAT
GATCTGCTGG CGAGCATCGA TGCCAACGAA TCCAACACCG ATGCGGAAGA AAAGGCCGAA
ATCAAGGTCT TCCTGCAATG GCTGGTGGAC AACCACTTTA CCTTTCTGGG TTACGAAGAG
TTCGAGGTGC GCACGGACGC CAATGGCGGT CAACTGGTGT ACGACGAATC TTCGTTCCTG
GGCCTGACCC GCCTGCTGCG TCCGGGGCTG AGCCACGAAG ACCTGCACAT CGAAGACTAT
GCGGTGAAAT ACCTGCAAGA GCCGGTGCTG CTGTCGTTCG CCAAGGCCGC GCACCCGAGC
CGCGTACACC GTCCGGCCTA CCCGGACTAC GTGTCGATCC GGCAGATCGA CGCCTCCGGC
AAGGTCATCA AGGAATGCCG CTTCATGGGC CTGTACACCT CGTCGGTGTA TGGCGAGAGC
GTGCGGCAGA TCCCGTACAT TCGCCGCAAG GTTGCAGAAG TCGAGCGTCG TTCCGGCTTC
GATGCCAAGG CGCACCTGGG CAAGGAACTG GCGCAGGTCG TCGAAGTGCT GCCCCGCGAC
GACCTGTTTC AGACCCCGGT GGACGAGTTG TTCGCCACGG TCATGTCCAT CGTGCAGATT
CAGGAGCGCA ACAAGATTCG CGTGTTCCTG CGCAAGGACC CGTACGGCCG TTTCTGCTAC
TGCCTGGCCT ACGTGCCGCG TGACGTGTAT TCCACCGAAG TGCGGCAGAA GATCCAGCAG
GTGCTGATGG ATCGCCTGAA AGCCAGTGAC TGCGAGTTCT GGACATTCTT CTCCGAATCG
GTCCTGGCGC GTGTGCAACT GATCCTGCGG GTAGACCCGA AGATCAACCT GGACATCGAC
GTTGCCCAGC TGGAAAACGA AGTCATTCAG GCCTGCCGCT CGTGGAAGGA CGACTACGCC
AGTCTGGTCG TGGAAAGCTT CGGCGAAGCG CAAGGCACCA ACGTGCTGGC CGACTTCCCG
AAAGGCTTCC CGGCGGGTTA TCGCGAGCGC TTTGCGGCGC ACTCGGCCGT GGTCGACATG
CAGCACATGC TGAGCCTGAG CGAAACCAAT CCACTGGTGA TGAGCTTCTA TCAGCCGCTG
GCCGGTGATC GTCAGCAATT GCATTGCAAG CTGTATCACG CCGACACGCC GCTGGCGCTG
TCCGACGTGC TGCCGATTCT GGAAAACCTT GGCCTGCGCG TACTGGGCGA GTTCCCGTAT
CGCCTGCACC ACGCCAATGG TCGCGAATTC TGGATTCATG ACTTCGCCTT TACCTATGGC
GAAGGTTTGA GCCTCGATAT TCAACAGCTT AACGACACCT TGCAGGATGC GTTCGTGCAT
ATCGTGCGCG GCGATGCCGA AAACGATGCG TTCAACCGTC TGGTGCTGAC GGCCGGTCTG
CCATGGCGCG ACGTGGCGTT GCTGCGTGCC TACGCGCGTT ACTTGAAGCA GATTCGTCTG
GGCTTTGATC TGGGTTACAT CGCCACCACC CTGAACAACC ACACCGACAT CGCCCGCGAG
CTGACGCGTA TGTTCAAGAC CCGTTTCTAT CTGGCGCGCA AACTGGGCTC CGATGACCTG
GACGACAAGC AATTGCGTCT GGAGCAGGCG ATTCTGACCG CACTGGACGA TGTTCAGGTG
CTCAACGAAG ACCGCATCCT GCGTCGCTAC CTGGACCTGA TCAAGGCCAC CCTGCGGACC
AACTTCTATC AGGCTGACGC AAACGGGCAG AGCAAGAGTT ACTTCAGCTT CAAGTTCAAC
CCGCGCCTGA TCCCTGAGCT GCCAAAGCCG GTGCCCAAGT TCGAGATCTT CGTGTATTCG
CCGCGTGTCG AAGGCGTGCA CCTGCGCTTC GGCAACGTGG CGCGTGGCGG CCTGCGCTGG
TCGGACCGCG AAGAAGACTT CCGTACCGAA GTGCTCGGTC TGGTCAAGGC TCAACAGGTG
AAGAACTCTG TCATTGTGCC GGTCGGCGCC AAGGGCGGCT TCGTGCCGCG CCGTCTGCCA
ACCACTGGCA ACCGCGACGA AGTGCAGGCA GAAGCAATTG CCTGCTACCG CATCTTTATT
TCGGGCCTGC TGGACATCAC CGACAACCTC AAGGAAGGCG TGCTGGTGCC GCCGGTCAAC
GTGGTGCGCC ACGACGACGA TGACCCGTAC CTGGTGGTCG CCGCCGACAA GGGCACCGCG
ACCTTCTCCG ACATCGCCAA CGGCATCGCT ATCGACTACG GCTTCTGGCT GGGTGATGCG
TTCGCCTCCG GTGGCTCGGC CGGTTACGAC CACAAGAAGA TGGGCATCAC CGCCAAGGGC
GCGTGGGTGG GCGTGCAGCG TCACTTCCGT GAACGCGACA TCAATGTGCA GCAGGACAGC
ATCAGCGTGA TCGGCATCGG CGACATGGCC GGTGACGTAT TCGGCAACGG CCTGCTGATG
TCCGACAAAC TGCAACTGGT CGCAGCGTTC AACCACTTGC ACATCTTCAT CGATCCAAAC
CCGGAGCCGG CCAGCAGCTT TGCCGAGCGC GAGCGTCTGT TCAATCTGCC GCGCTCGTCG
TGGACCGATT ACGACACCAG CATCATGTCC GCTGGCGGCG GGATCTTCCC GCGCAGCCTC
AAGAGCATCG CCATCACCGA ACAGATGAAG GCGCGCTTCG ACATCAAGGC CGACAAGCTG
ACTCCGACCG AGCTGCTGCA CGCGCTGCTC AAGGCGCCGG TTGATCTGTT GTGGAACGGC
GGCATCGGTA CGTACGTCAA GTCCAGCGAA GAGTCGCATG CCGATGTCGG CGACAAAGCC
AACGACGCGC TGCGTGTCGA CGGCAACGAG CTGCGCTGCA AGGTGGTGGG CGAGGGCGGC
AACCTGGGCA TGACCCAGCT GGGTCGTGTC GAGTTCGGCC TCAATGGCGG CGCAACCAAC
ACCGACTTCA TCGATAACGC CGGTGGTGTG GACTGCTCCG ACCACGAAGT GAACATCAAG
ATCCTGCTCA ACGAAGTGGT GCAGGCCGGT GACATGACCG AGAAGCAGCG CAACCAGCTG
CTCGAAAGCA TGACCGACGA AGTGGGTCAT CTGGTGCTCG GCAACAACTA CAAGCAGACC
CAGGCACTGT CGCTGGCCGC ACGCCGTGCG TACGAGCGGA TTGCCGAATA CAAGCGTCTG
ATGAGCGACC TGGAAGCGCG TGGCAAGCTC GATCGCGCCA TTGAGTTCCT GCCTGCTGAA
GACCAGATTG CCGAGCGGGT TGCGGCCAAA CAAGGCCTGA GTCGTGCCGA GCTGTCGGTG
TTGATCTCCT ACAGCAAGAT CGACCTCAAG GAAGCGTTGC TGGAATCGCG TGTGCCGGAT
GATGATTATC TGACCCGCGA CATGGAAACC GCATTCCCGC CGTCACTGGG TGCCAGGTTC
TCCACGGCCA TGCGCAGCCA CCGTCTGAAG CGCGAGATCG TCAGCACGCA GATCGCCAAC
GACCTGGTCA ACCACATGGG CATCACCTTT GTGCAGCGCC TCAAAGAGTC GACCGGCATG
AGTGCTGCGG CTGTGGCCGG TGCCTACGTG ATTGTGCGGG ACATCTTCCA CCTGCCGCAC
TGGTTCCGTC AGATCGAATC GCTGGACTAC AAGGTTTCGG CTGAAATCCA GCTGGCGCTG
ATGGATGAGC TGATGCGTCT GGGGCGTCGT GCCACGCGCT GGTTCCTGCG TAGCCGTCGC
AACGAGCTGG ATGCCGGTCG TGACGTGGCG CACTTCGGTC CGCACCTCGC CGCGCTGGGC
CTCAAGCTCG ACGAACTGCT GGAAGGTCCG ACCCGCGAGA TCTGGCAGAC GCGTTATCAG
GCTTATGTCG AAGCCGGCGT GCCGGAATTG CTGGCGCGCA TGGTTGCCGG GACGACTCAC
CTGTACACGC TGTTGCCGAT CATCGAAGCC TCCGACGTCA CCGGGCAGAA CGCTGCCGAT
GTGGCCAAGG CTTACTTCGC CGTAGGCAGC GCGCTGGACA TCACCTGGTA CTTGCAGCAG
ATCAGCAGCC TGCCGGTGGA AAACAACTGG CAAGCCCTGG CGCGTGAAGC GTTCCGTGAC
GATATCGACT GGCAACAGCG GGCGATCACC GTGTCGGTCC TGCAAATGGC AGACGGCCCG
TCAGACATCG AAGCGCGTCT GGCTCTGTGG CTGGAACAGC ATTCGCTGAT GGTCGAGCGC
TGGCGCGCCA TGCTGGTCGA GCTGCGTGCG GCCAGTGGCA CGGACTACGC CATGTATGCC
GTCGCCAACC GCGAACTGCT GGACCTGGCC ATGAGCGGGC AGAGCCTCAC GGTCTGA
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| Protein sequence | MAFFTAASKS DFQHQLQAAL AQHISEQALP QVALFAEQFF GIISLDELTQ RRLSDLAGCT
LSAWRLLERF EHAHPQVRVY NPDYERHGWQ STHTAVEVLH HDLPFLVDSV RTELNRRGYS
IHTLQTTVLS VRRGANGELL ELLPKGATGE DVLQESLMYL EIDRCASASE LNVLARELEQ
VLGEVRVAVE DFAPMKARLH DLLASIDANE SNTDAEEKAE IKVFLQWLVD NHFTFLGYEE
FEVRTDANGG QLVYDESSFL GLTRLLRPGL SHEDLHIEDY AVKYLQEPVL LSFAKAAHPS
RVHRPAYPDY VSIRQIDASG KVIKECRFMG LYTSSVYGES VRQIPYIRRK VAEVERRSGF
DAKAHLGKEL AQVVEVLPRD DLFQTPVDEL FATVMSIVQI QERNKIRVFL RKDPYGRFCY
CLAYVPRDVY STEVRQKIQQ VLMDRLKASD CEFWTFFSES VLARVQLILR VDPKINLDID
VAQLENEVIQ ACRSWKDDYA SLVVESFGEA QGTNVLADFP KGFPAGYRER FAAHSAVVDM
QHMLSLSETN PLVMSFYQPL AGDRQQLHCK LYHADTPLAL SDVLPILENL GLRVLGEFPY
RLHHANGREF WIHDFAFTYG EGLSLDIQQL NDTLQDAFVH IVRGDAENDA FNRLVLTAGL
PWRDVALLRA YARYLKQIRL GFDLGYIATT LNNHTDIARE LTRMFKTRFY LARKLGSDDL
DDKQLRLEQA ILTALDDVQV LNEDRILRRY LDLIKATLRT NFYQADANGQ SKSYFSFKFN
PRLIPELPKP VPKFEIFVYS PRVEGVHLRF GNVARGGLRW SDREEDFRTE VLGLVKAQQV
KNSVIVPVGA KGGFVPRRLP TTGNRDEVQA EAIACYRIFI SGLLDITDNL KEGVLVPPVN
VVRHDDDDPY LVVAADKGTA TFSDIANGIA IDYGFWLGDA FASGGSAGYD HKKMGITAKG
AWVGVQRHFR ERDINVQQDS ISVIGIGDMA GDVFGNGLLM SDKLQLVAAF NHLHIFIDPN
PEPASSFAER ERLFNLPRSS WTDYDTSIMS AGGGIFPRSL KSIAITEQMK ARFDIKADKL
TPTELLHALL KAPVDLLWNG GIGTYVKSSE ESHADVGDKA NDALRVDGNE LRCKVVGEGG
NLGMTQLGRV EFGLNGGATN TDFIDNAGGV DCSDHEVNIK ILLNEVVQAG DMTEKQRNQL
LESMTDEVGH LVLGNNYKQT QALSLAARRA YERIAEYKRL MSDLEARGKL DRAIEFLPAE
DQIAERVAAK QGLSRAELSV LISYSKIDLK EALLESRVPD DDYLTRDMET AFPPSLGARF
STAMRSHRLK REIVSTQIAN DLVNHMGITF VQRLKESTGM SAAAVAGAYV IVRDIFHLPH
WFRQIESLDY KVSAEIQLAL MDELMRLGRR ATRWFLRSRR NELDAGRDVA HFGPHLAALG
LKLDELLEGP TREIWQTRYQ AYVEAGVPEL LARMVAGTTH LYTLLPIIEA SDVTGQNAAD
VAKAYFAVGS ALDITWYLQQ ISSLPVENNW QALAREAFRD DIDWQQRAIT VSVLQMADGP
SDIEARLALW LEQHSLMVER WRAMLVELRA ASGTDYAMYA VANRELLDLA MSGQSLTV
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