| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3745 |
|---|
| Symbol | lpxH |
|---|
| ID | 1185413 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 4231595 |
|---|
| End bp | 4232341 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637395095 |
|---|
| Product | UDP-2,3-diacylglucosamine hydrolase |
|---|
| Protein accession | NP_793519 |
|---|
| Protein GI | 28870900 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2908] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01854] UDP-2,3-diacylglucosamine hydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.459714 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATACTGC TGATCTCCGA TCTGCACCTT GAGCAGGAGC GCCCGGACAT TACCCGGGCG
TTTCTGGCTC TCCTCGCTGG TCGTGCCCGT ACGGCCGAAG CGTTGTATAT CCTCGGGGAT
TTCTTTGAAG CCTGGATCGG TGACGACGCC ATGTCGCCGT TCCAGCGTTC GATCTGCCAG
GCCCTGCGCG AACTGAGCGA CAGCGGCACA CGAATTTTTC TGATGCACGG TAACCGTGAC
TTCATGCTCG GCAAGGGTTT CTGCAAGGCA GCAGGCTGCA CGCTGTTGAG CGACCCCAGC
GTCGTGCAGT TGAACGGTGA GCCGGTGCTG TTGATGCACG GCGACAGCCT GTGCACGCGC
GATGAAGGTT ATATGCGGAT GCGCCGCTAC CTGCGCCACC CGTTGACGTT GTTCATATTG
CGTCATCTGC CGTTGAGCAC CCGCCATAAA CTGGCGCGCA AGCTGCGCAA CGAAAGCCGC
GCCCAGACGC GCATGAAAGC CAACGACATT GTCGATGTGA CGCCGGACGA AGTGCCGAGG
ATCATGCAGC AGTTCGGTGT GCGCACGCTG GTCCACGGCC ACACTCACCG CCCGGCGATT
CACAAATTGC AGATTGGCGA TCAGTCGGCA AAACGTATCG TGCTGGGTGA CTGGGACCGT
CAGGGCTGGG TGCTGCAGGT CGATGAACAG GGGATGAATC TCGGCTCGTT CGACTTTGTG
CCGGAGACGG TTGCGTTGCT GAACTGA
|
|---|
| Protein sequence | MILLISDLHL EQERPDITRA FLALLAGRAR TAEALYILGD FFEAWIGDDA MSPFQRSICQ
ALRELSDSGT RIFLMHGNRD FMLGKGFCKA AGCTLLSDPS VVQLNGEPVL LMHGDSLCTR
DEGYMRMRRY LRHPLTLFIL RHLPLSTRHK LARKLRNESR AQTRMKANDI VDVTPDEVPR
IMQQFGVRTL VHGHTHRPAI HKLQIGDQSA KRIVLGDWDR QGWVLQVDEQ GMNLGSFDFV
PETVALLN
|
|---|
| |