Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3741 |
Symbol | |
ID | 1185409 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 4225753 |
End bp | 4227606 |
Gene Length | 1854 bp |
Protein Length | 617 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637395091 |
Product | sigma-54 dependent transcriptional regulator |
Protein accession | NP_793515 |
Protein GI | 28870896 |
COG category | [K] Transcription [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.130884 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTCAAC CCAGCGCTTC GCTTGCTCAC GACCTCATCA TTCAGGATTC ATGGACTCGC TGCCGGGACT TCGGTCTCAG CCATCAGACG CGTCCATCGT TCGGCCAGCT GCCGGGCGCA GAGGTTTCCC GGCTGCTGGA ACGCCATCAC GGTCTGGTGC AAACCACCCA TCAGGAGGTG TTGCCGGTCT ATGAAAACAT CCTCAGCAAC TCCAATTGCC TGATCATGCT GGCCGACACT GATGGCCAGT TACTCAAGTC GTGGGGCAAT CAGCGTTTCG TCGAAGCTTC GCAAACCCTG GGCTTCCTGG CCGGAGCCAG TTGGAGCGAA CGCGGCACCG GCACCAACGC CATCGGCACG GCGCTGGCCT GCGAACAGGC GATTCATATC GAGCCGGATG AACACTTTCT CAAAGCCAAC CGGTTCATGA CCGGTTCTGC TTCGCCGATC TTCGATGCCG ATCGGCGCAT CATTGCCGTA CTGGATGTGT CGAGTGACAG CTTCCTTCCC CCTTCGCACA CGCTGGGCAT GGTCAAAATG ATGAGCCAGT CGGTGGAAAA CCGCCTGATC CTCGATCAGT TCCGCGACAC GCATTTCCAG CTGATCTTCA ATACAGCCCT GAACAACCTC GACAGCCAGT GGGCAGGCCT GCTGATTTTC GACGAAAGCG GCCGGATTCT CTGCGCTAAT CGCCGCGCCG ACAATTTGCT GGGCACCCGG CTTTCTGGTG TCAATATCGA GACGCTGTTC AAGTGCCCGA TTCTGCAACT GCTGAGCGAG ACGCAAGCGC GCCCCTTCGC GCTGCATGCG TTTGGCAACA ATCGCTTTCA ATGCCTACTC AAGCGTCCGA CTCGCAAGCC GCTCAAGCTG CACAGCGTAA AGCCCGCTCA GGCACCTGTT GCGCCGCGCA GCCTCGATCT GGAGGCGATC AGCCTCGGCG ATGCAAGAAT CGAGAAAGCC GTGCTCCAGG CGCAGCGCCT GCTGGAAAAA GACATACCGT TGTTGATTCA CGGGGAAACC GGGGTGGGCA AGGAAGTGTT CGTCAAAGCG CTGCATCAGG CCGGTTCGCG CGCCAGCGAG CCACTGATCG CGGTGAACTG CGCGGCAATT CCGGCCGATT TGGTCGAGGC CGAGCTGTTT GGCTACGAGA GAGGCGCGTT TACCGGCGCA AACCAGAAAG GCAGCATCGG GCTGATTCGC AAGGCCGATA AAGGCACGCT GTTTCTCGAT GAGGTCGGCG ACATGCCGAT GCCGGTGCAG GCGCGATTGC TACGGGTGTT GCAGGAGCGC TGCGTTCAAC CACTGGGCAG CAGCGAGTTG TATCCGGTAG ACATACGGCT GATATCCGCC ACCAACCGAA CCCTGCGTGA TCAGGTGCAG ACCGGGCATT TTCGTCAGGA CCTTTATTAT CGAATCAGCG GGCTCAACAT CGAATTGCCA CCATTGCGCG AGCGCACCGA CAAACATGCA CTCATCCAGC GTATCTGGGA GCGGCATCGC GACGCGCATC AACGGGCGGG GTTTTCCCGA GAGGTGCTTG AGCTGTTTGA ACACCATCCC TGGCCGGGCA ATATTCGCCA GCTCAACAGC GTGATTCAGG TGGCACTGGC ATTGGCGGAC GAGCAGCCGA TCAGTGCCGA ACACCTGCCG GAAGACTTTC TGCTGGATGT GGGCATGGAT GAGGAATGCC GGGAGACGGC GCAAGCCCGT CAATCGCCCT ACCGACAGTC GTCGACGCAA GACCTGAGCC ACCAGTTGCA GGCCGCGGGC GGAAATATTT CACTGCTGGC CAAACAGTTG GGCGTGAGCC GCAACACGCT GTACAAGCGG TTGCGGGAAC AGCGGATTGT TTAG
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Protein sequence | MSQPSASLAH DLIIQDSWTR CRDFGLSHQT RPSFGQLPGA EVSRLLERHH GLVQTTHQEV LPVYENILSN SNCLIMLADT DGQLLKSWGN QRFVEASQTL GFLAGASWSE RGTGTNAIGT ALACEQAIHI EPDEHFLKAN RFMTGSASPI FDADRRIIAV LDVSSDSFLP PSHTLGMVKM MSQSVENRLI LDQFRDTHFQ LIFNTALNNL DSQWAGLLIF DESGRILCAN RRADNLLGTR LSGVNIETLF KCPILQLLSE TQARPFALHA FGNNRFQCLL KRPTRKPLKL HSVKPAQAPV APRSLDLEAI SLGDARIEKA VLQAQRLLEK DIPLLIHGET GVGKEVFVKA LHQAGSRASE PLIAVNCAAI PADLVEAELF GYERGAFTGA NQKGSIGLIR KADKGTLFLD EVGDMPMPVQ ARLLRVLQER CVQPLGSSEL YPVDIRLISA TNRTLRDQVQ TGHFRQDLYY RISGLNIELP PLRERTDKHA LIQRIWERHR DAHQRAGFSR EVLELFEHHP WPGNIRQLNS VIQVALALAD EQPISAEHLP EDFLLDVGMD EECRETAQAR QSPYRQSSTQ DLSHQLQAAG GNISLLAKQL GVSRNTLYKR LREQRIV
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