| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3726 |
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| Symbol | clpP-2 |
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| ID | 1185391 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4208232 |
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| End bp | 4208882 |
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| Gene Length | 651 bp |
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| Protein Length | 216 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637395073 |
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| Product | ATP-dependent Clp protease, proteolytic subunit ClpP |
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| Protein accession | NP_793500 |
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| Protein GI | 28870881 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0740] Protease subunit of ATP-dependent Clp proteases |
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| TIGRFAM ID | [TIGR00493] ATP-dependent Clp protease, proteolytic subunit ClpP |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.468677 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAGGACA TGTCCCGCAA TTCTTATATT CAGCAGAACT CTGACATCCA GGCCGCTGGC
GGCCTGGTCC CGATGGTTAT CGAGCAGTCC GCCCGTGGCG AACGCGCCTA TGACATCTAT
TCGCGCCTTC TCAAGGAGCG GGTCATCTTT ATGGTTGGTC CGGTAGAGGA CTACATGGCC
AACCTTATCG CCGCGCAACT GCTTTTCCTT GAAGCGGAAA ACCCGGACAA GGATATCCAT
CTCTACATCA ACTCACCGGG CGGTTCGGTC ACTGCAGGCA TGTCGATCTA CGACACCATG
CAGTTCATCA AGCCGGACGT CTCGACCATC TGCATCGGTC AGGCGTGCAG CATGGGTGCA
TTCCTGCTGG CTGGCGGCGC AGAGGGCAAG CGTCACTGCC TGCCTAACTC GCGGATGATG
ATTCACCAGC CGTTGGGCGG TTTCCAGGGT CAGGCGTCGG ACATCGACAT CCATGCCAAG
GAAATCCTGC ACATTCGTCA TCGCCTGAAC TCGTTGCTGG CGCATCACAC CGGCCAGAGC
CTCGAAACCA TCGAGCGTGA TACCGAGCGT GATAACTTCA TGAGCGCAGA GCGTGCGGCG
GAATACGGCC TGATCGACTC CGTGATCAAC AAGCGTCAAA TGCCTGCCTA A
|
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| Protein sequence | MQDMSRNSYI QQNSDIQAAG GLVPMVIEQS ARGERAYDIY SRLLKERVIF MVGPVEDYMA
NLIAAQLLFL EAENPDKDIH LYINSPGGSV TAGMSIYDTM QFIKPDVSTI CIGQACSMGA
FLLAGGAEGK RHCLPNSRMM IHQPLGGFQG QASDIDIHAK EILHIRHRLN SLLAHHTGQS
LETIERDTER DNFMSAERAA EYGLIDSVIN KRQMPA
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