Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3725 |
Symbol | clpX |
ID | 1185390 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 4206842 |
End bp | 4208125 |
Gene Length | 1284 bp |
Protein Length | 427 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637395072 |
Product | ATP-dependent Clp protease, ATP-binding subunit ClpX |
Protein accession | NP_793499 |
Protein GI | 28870880 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1219] ATP-dependent protease Clp, ATPase subunit |
TIGRFAM ID | [TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.947433 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGACA CCCGCAACGG CGAGGACAAC GGCAAATTGC TCTATTGCTC CTTCTGTGGC AAAAGCCAGC ATGAAGTGCG CAAATTGATT GCCGGCCCCT CGGTCTTTAT CTGCGACGAG TGCGTCGACC TGTGCAATGA CATCATCCGC GAGGAGGTGC AGGAAGCACA GGCAGAAAGC AGCGCGCATA AATTGCCTTC GCCTAAAGAA ATCAGCGGCA TCCTTGACCA GTATGTAATC GGTCAGGAAC GTGCCAAAAA GGTTCTCGCA GTAGCGGTGT ACAACCACTA CAAGCGTCTG AACCAGCGCG ACAAGAAGAA CGACGATGTC GAGCTGGGCA AGAGCAACAT CCTGCTGATC GGCCCTACGG GCTCCGGCAA GACGCTGCTG GCTGAAACAC TGGCCCGCCT GCTTAACGTG CCGTTTACCA TTGCCGACGC CACCACCCTG ACCGAAGCCG GTTATGTGGG TGAGGACGTC GAAAACATTA TCCAGAAGCT GTTGCAGAAA TGTGATTACG ATGTCGAGAA GGCCCAGATG GGTATTGTCT ACATCGATGA AATCGACAAG ATTTCGCGCA AATCCGACAA CCCTTCGATC ACTCGTGACG TTTCCGGTGA AGGCGTGCAA CAGGCCTTGC TGAAACTGAT CGAGGGCACC GTGGCTTCCG TTCCGCCTCA AGGTGGTCGC AAGCATCCGC AGCAGGAATT CCTGCAGGTG GACACGCGCA ACATCCTCTT CATATGCGGT GGCGCCTTCT CGGGCCTGGA AAAGGTCATT CAGAACCGTT CCACCCGTGG CGGCATCGGT TTCAACGCCG AAGTTCGCAG CAAGGAGGAG GGCAAGAAGG TGGGCGAGTC CCTGCGTGAG GTCGAGCCTG ACGATCTGGT CAAGTTTGGT CTGATCCCGG AATTCGTCGG TCGTCTGCCG GTGCTTGCAA CGCTGGACGA GCTGGATGAG GCTGCTTTGA TTCAGATCCT CACCGAGCCG AAAAACGCGT TGACCAAGCA GTACGCCAAG CTGTTCGAAA TGGAAGGCGT GGACCTCGAG TTCCGCACCG ACGCGCTGAA ATCGGTTGCC CGTCGTGCGC TGGAGCGCAA GACCGGTGCT CGTGGCCTGC GCTCCATCCT CGAAGGCGTG CTGCTCGACA CCATGTACGA GATCCCGTCG CAAAGCGACG TGAGCAAGGT GGTGATCGAC GAGAGCGTTA TCGATGGCAC GTCCAAGCCG TTGCTGATCT ACGAAAACAG CGAGCCACCC GCCAAGGCTG CTCCTGACGC GTAA
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Protein sequence | MTDTRNGEDN GKLLYCSFCG KSQHEVRKLI AGPSVFICDE CVDLCNDIIR EEVQEAQAES SAHKLPSPKE ISGILDQYVI GQERAKKVLA VAVYNHYKRL NQRDKKNDDV ELGKSNILLI GPTGSGKTLL AETLARLLNV PFTIADATTL TEAGYVGEDV ENIIQKLLQK CDYDVEKAQM GIVYIDEIDK ISRKSDNPSI TRDVSGEGVQ QALLKLIEGT VASVPPQGGR KHPQQEFLQV DTRNILFICG GAFSGLEKVI QNRSTRGGIG FNAEVRSKEE GKKVGESLRE VEPDDLVKFG LIPEFVGRLP VLATLDELDE AALIQILTEP KNALTKQYAK LFEMEGVDLE FRTDALKSVA RRALERKTGA RGLRSILEGV LLDTMYEIPS QSDVSKVVID ESVIDGTSKP LLIYENSEPP AKAAPDA
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