| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3717 |
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| Symbol | |
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| ID | 1185382 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 4195234 |
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| End bp | 4197090 |
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| Gene Length | 1857 bp |
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| Protein Length | 618 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637395064 |
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| Product | ABC transporter, periplasmic substrate-binding protein |
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| Protein accession | NP_793491 |
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| Protein GI | 28870872 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCCAT TGCATTCCCT GCGCGCGCAA GCGGCCGGCC TGCTGCTGGC CAGCCTCGCT
TGCACGGTAC AGGCGGCGCC TCAGCATGGC GTGACGCTGT ACGACGAACA GCCCAAATAC
CCGGCCGACT TCAAGCACTT CGACTACGTG AACCCGGATG CGCCCAAGGG CGGCACGTTC
CGTCAGGCAG GCTTTGGCGG GTTCGACAGC CTCAACCCGT TTATCAACAA GGGCGTGCCG
GCAGATGACA TCGGCTTGAT CTACGACACC CTGGCCCGCG CCAGCCTGGA CGAACCCTTC
AGTGAATACG GGCTGGTTGC CGGCAAAATC GAGAAAGCGC CGGACAACAG CTGGGTACGC
TTCTACCTGC GGCCTGAAGC ACGCTTCCAT GACGGCCACC CGATCCGCGC CGAAGATGTG
GAATTCAGCT TCAAGACCCT GATGGAACAC GGCTCGCCCA TGTACAAGGG CTACTACGCC
GACGTCGATC AGGTCGTCGT CGAAGACCCG CTGCGGGTGC TGTTCAAGTT CAAGCACAAG
GGCAGCCGCG AAATGCCACT GATTCTTGGC CAGTTGCCCG TGCTGCCCAA GCACTTCTGG
GCCGACCGCG ACTTCAGCAA AGGCAACCTG GACTTCCCGC TGGGCAGCGG GCCGTACAAG
GTGGTCGATG TAAAAGCCGG GCGCTCGGTG CGCTATGAGC GGGTCAAGGA TTACTGGGGC
AAGGACCTGC CGATCAACAA GGGTTTCTAC AATTTCGACG TGCTGACCAC CGACTACTAC
CGCGACAATA CTGTCGCTCT GGAAGCCGGC AAGGCCGGGC AGTTCGACTA CTGGATAGAG
ACCAGCGCCA AAAACTGGGC GACCGCCTAC AACACCCCGG CAGTCCGCGA TGGCAGGCTG
GTCAAGGAAG AGCTGCCCAA CGGTAACCCG ACCGGTATGC AGGGGTTCGT TTTCAACTTG
CGCAAACCGG TATTCCAGGA CGCGCGGGTG CGCGAAGCGC TGACCTTGCT GCTGGATTTC
GAGTGGACCA ACAAACAGCT TTTCAACGGT GCCTACAGCC GTACCAAAAG TTATTTCGAC
AACTCGGAAA TGGCCTCAAG CGGCCTGCCC TCTGCCGAGG AACTGAAAAT CCTCGAACCG
CTGCGCGGCA AGATTCCGGA TCGGGTATTC ACCGAGGCTT TTCAGCTACC GGTTACCGAC
GGCAGCGGCA TGATTCGCCC ACAACAGCGT CGGGCCTTCC AGCTTTTGCA GGAAGCCGGC
TGGAAAATCG TCGATGACAA GATGGTCGAC ACCCAAGGCA ACCCGGTGAA GCTGGAATTT
TTGATCGCAC AGACCGAATT CGAGCGCATC CTGCTGCCTT ACAAACGCAA CCTGAGTAAT
CTGGGTATCG AACTGGTGAT TCGCCGCGCC GATGTGTCGC AATACATCAA CCGTTTGCGT
TCGCGGGACT ACGACATGAT TGTCAGCAGC TTTCCGCAGT CCAGCTCGCC CGGTAACGAG
CAGCGCGTGT ACTTCGACTC GTCCAGCGCC GACAATCCGG GCAGTCGCAA TGTCATCGGT
TTGAAGGACC CAGCCGTCGA TACGCTGGTC AACGGTCTAA TCAACGCCGA CTCACGCGCC
AGCCTCATCA ACTACACCAA GGCCCTTGAC CGGGTGTTGC TGTGGGGTTT CTATGTGGCC
CCCAACTGGC ACATCAAGAC CTGGCGGGTG GCTTACTGGA ACCACATCGA TCACCCCAAG
GCCAAGGCGC TTTCTGATAT CGGCCTGATG ACCTGGTGGG CCAAACCGGA TGTCAAACCC
GTGACCGCGA CCCCGTCAGC CACTGATCAG GCCAAGCCTG CGAACGCGGA GCAATAA
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| Protein sequence | MNPLHSLRAQ AAGLLLASLA CTVQAAPQHG VTLYDEQPKY PADFKHFDYV NPDAPKGGTF
RQAGFGGFDS LNPFINKGVP ADDIGLIYDT LARASLDEPF SEYGLVAGKI EKAPDNSWVR
FYLRPEARFH DGHPIRAEDV EFSFKTLMEH GSPMYKGYYA DVDQVVVEDP LRVLFKFKHK
GSREMPLILG QLPVLPKHFW ADRDFSKGNL DFPLGSGPYK VVDVKAGRSV RYERVKDYWG
KDLPINKGFY NFDVLTTDYY RDNTVALEAG KAGQFDYWIE TSAKNWATAY NTPAVRDGRL
VKEELPNGNP TGMQGFVFNL RKPVFQDARV REALTLLLDF EWTNKQLFNG AYSRTKSYFD
NSEMASSGLP SAEELKILEP LRGKIPDRVF TEAFQLPVTD GSGMIRPQQR RAFQLLQEAG
WKIVDDKMVD TQGNPVKLEF LIAQTEFERI LLPYKRNLSN LGIELVIRRA DVSQYINRLR
SRDYDMIVSS FPQSSSPGNE QRVYFDSSSA DNPGSRNVIG LKDPAVDTLV NGLINADSRA
SLINYTKALD RVLLWGFYVA PNWHIKTWRV AYWNHIDHPK AKALSDIGLM TWWAKPDVKP
VTATPSATDQ AKPANAEQ
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