| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3656 |
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| Symbol | ligA |
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| ID | 1185321 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 4118486 |
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| End bp | 4120849 |
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| Gene Length | 2364 bp |
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| Protein Length | 787 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637395003 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | NP_793430 |
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| Protein GI | 28870811 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGGCCG CCGAAACCCG AATCCTGGAA CTGCGTGCAG AGCTGGATCA GCACAACTAC
CGCTATCACG TTCTGGACGA GCCGAGCATC CCGGATGCCG AATACGACCG CCTGTTCCAC
GAGCTCAAGG CCCTTGAGGC AGAAAACCCG CATCTGGTCA CGCCCGATTC GCCGACCCAG
CGGGTGGGCA GTGCCGCCTT GTCGGCTTTC ACCCAGGTGC GTCACGAAAT GGCCATGCTC
AGCCTGGGCA ACGCCTTTGA AGAAAACGAC CTGCGCGAGT TCGACCGCCG TGTAACCGAA
GGGCTGGACC TGCCTGCCGG GGATCTGTTT GGCGAAGGCG GCAAGGTGCA ATACAGCTGC
GAGCCCAAGC TGGACGGTCT GGCGGTCAGC CTGCTGTACC GCGACGGCGC ACTGGTACGC
GGTGCCACGC GCGGCGACGG GACCACGGGC GAAGACATCA GCGTCAATGT GCGCACCGTG
CGCAATATCC CGCTCAAGCT GCAAGGCAAG GGCTGGCCAG AGCTGCTGGA AGTACGCGGC
GAAGTGTTCA TGTCCAAGGC CGGTTTCGAG CGGCTCAACG CCAGCCAGCT GGAAGTTGGC
GGCAAGACCT TCGCCAACCC GCGCAACGCC GCTGCTGGCA GCCTGCGCCA GCTGGATTCG
AAGATCACCG CCAACCGTCC GCTGGAATTC TGTTGTTATG GCCTGGGGCA GACCTCGGCA
GAAATTGCCG ACACGCACAT CGGCGTGCTT GAAACGTTGA AAAAATGGGG TATGCCGGTC
AGTCGCGAAC TGAAACTGGC GGACGGCGTC GAGGAATGTC TGGCTTACTA CCGCGACATC
GGTGAGCGAC GTCTTTCGCT GACCTACGAG ATCGACGGTG TGGTGTTCAA GGTCAACAAC
CTGGCGGCGC AGCGCGAACT GGGCTTTCGT GCCCGCGAGC CACGCTGGGC GATTGCCCAC
AAGTTTCCGG CCATGGAAGA GCTGACCGAA CTGCTGGACG TTGAATTTCA GGTCGGCCGC
ACCGGCGCGG TCACGCCGGT CGCGCGCCTC AAGCCGGTCA AGGTTGCCGG TGTCATGGTC
GCCAACGCCA CGTTGCACAA CATGGATGAA GTGGCGCGGC TGGGGCTGAT GATTGGCGAC
ACGGTGATTA TCCGTCGCGC CGGTGACGTG ATTCCGCAGG TAGTGCAGGT CGTCGTCGAG
CGCCGCCCCG AAACCGCCAA ACCGGTCGAA GTCCCGCAAA GCTGCCCGGT GTGCGGCTCG
CATGTCGAGC GCACGCAGTT GATCAAACGC AGCAAGGGCA AGGAAACCGT TACCGAAGGC
GCGGTGTATC GCTGCGTCGG ACGGCTGGCC TGTGGTGCGC AACTCAAGCA GGCGATCATT
CACTATGTGT CGCGTCGGGC AATGGACATC GAAGGCCTGG GCGACAAGAC CATCGAGCAA
CTGGTCGATG AAAAGCTCAT TGGTTCGCCT GCCGACCTGT ACAAACTGAA ATACGAACAG
ATCATCGACC TGGAGGGTTT TGCTGAAATC TCCAGCAACA AGCTGCTCAA GGCGATTGCC
GACAGCCGAC AGCCGACCCT GGCGCGCTTC ATCTATGCCC TGGGTATTCC CGATGTAGGG
GAGGAGACGG CCAAGGTACT GGCGCGCTCA CTGGCGTCGT TGGACCGCGT CAAACAGGCA
CTGCCGGAGG TGCTGACGTA TCTGCCGGAT GTCGGTCTGG AAGTCGCTTA CGAAATTCAC
AGCTTCTTCG AGGATGAGCA CAACCGCAAC GTCATCGACG CGCTGCTGGG CGAGTGCGGT
CTGCAATTGC AGGATCAGGG TGAGCTGGGT GCAGAGTTTG CCGCCAGCAC CACGCTGGAA
GGCCTGATCG ACAAGCTGCA CATTCCATCG GTAGGGCCGG GTGCTGCACA GAAACTGGCT
GACCGGTTCG GCACGCTGGA GGCGGTCATC AGCGCTGACT GGCTGGACAT GCGCCAGACG
CTGCCGGAGA AACAGGCCAA ATCGGTCCGC GACTTCTTCG ACGACAACGC CAACGCCGAA
CGCGCCCGCG CCATCGAAGC CCAGCTCAAG GACTTCGGCA TGCATTGGCG CAGCGAGAAA
AAAACCGTCG AAGGCTTGCC GCTGGCAGGC CAGACCTGGG TGCTGACCGG TTCGCTGGAA
CGCATGAGTC GCGACGTGGC CAAGGAAAAA CTCGAAAGCC TGGGGGCCAA GGTGTCCGGC
TCGGTATCGG CCAAGACCCA CACCGTGGTC GCCGGGCCAG GTGCGGGTTC CAAACTGACC
AAAGCCAATG AGCTGGGCCT GACCGTGCTG GACGAAGAGG CACTGCTCAA GCGCCTGACC
GAACTGGGCG TAGCGGTTGA TTGA
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| Protein sequence | MKAAETRILE LRAELDQHNY RYHVLDEPSI PDAEYDRLFH ELKALEAENP HLVTPDSPTQ
RVGSAALSAF TQVRHEMAML SLGNAFEEND LREFDRRVTE GLDLPAGDLF GEGGKVQYSC
EPKLDGLAVS LLYRDGALVR GATRGDGTTG EDISVNVRTV RNIPLKLQGK GWPELLEVRG
EVFMSKAGFE RLNASQLEVG GKTFANPRNA AAGSLRQLDS KITANRPLEF CCYGLGQTSA
EIADTHIGVL ETLKKWGMPV SRELKLADGV EECLAYYRDI GERRLSLTYE IDGVVFKVNN
LAAQRELGFR AREPRWAIAH KFPAMEELTE LLDVEFQVGR TGAVTPVARL KPVKVAGVMV
ANATLHNMDE VARLGLMIGD TVIIRRAGDV IPQVVQVVVE RRPETAKPVE VPQSCPVCGS
HVERTQLIKR SKGKETVTEG AVYRCVGRLA CGAQLKQAII HYVSRRAMDI EGLGDKTIEQ
LVDEKLIGSP ADLYKLKYEQ IIDLEGFAEI SSNKLLKAIA DSRQPTLARF IYALGIPDVG
EETAKVLARS LASLDRVKQA LPEVLTYLPD VGLEVAYEIH SFFEDEHNRN VIDALLGECG
LQLQDQGELG AEFAASTTLE GLIDKLHIPS VGPGAAQKLA DRFGTLEAVI SADWLDMRQT
LPEKQAKSVR DFFDDNANAE RARAIEAQLK DFGMHWRSEK KTVEGLPLAG QTWVLTGSLE
RMSRDVAKEK LESLGAKVSG SVSAKTHTVV AGPGAGSKLT KANELGLTVL DEEALLKRLT
ELGVAVD
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