| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3540 |
|---|
| Symbol | |
|---|
| ID | 1185205 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3996659 |
|---|
| End bp | 3997612 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637394893 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | NP_793320 |
|---|
| Protein GI | 28870701 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGACTCA ACCTGCGTCA GTTGCAGATT TTCTGTGCGA TCACCCGCTT TGGCAGCACC
ACCAGCGCCG GCAATGCACT GGCGTTGTCC CAATCGGCAA CCAGTGCTGC GCTCAATGAA
CTGGAAGGCG CGCTGGGCAC CCGCCTGTTT GACCGGGTGG GCAAGCGCCT GGTACTCAAC
GACAGCGGCC AGAGCTTATT GCCGCGCGCC ATGAAAATGC TGGAAAACGC CCAGCAGATC
GAAGACAGCT TTCTATTGCC CGACACCACG TTGAACGCAC GTTTGCGAAT CGGCAGTAGC
AGCACCATCG GCAATTACGA GCTGCCGTCG ATTGTCGGCG CACTGCGCGA ATCGGCACCC
TTGCTGCGGG TGGACGTAGA CATCGGCAAC AGCGCGCTGA TCGCTCGCAA GGTCGCCCGT
TTCGAGATCG TCATGGGGCT GATCGAGGCA CCCTGTCACC TTCCGGAACT GATCGCCGAG
CCGTGGAGTG TCGATGAGAT GGTCATTGTC GCTGGCATCA ATCACCCGCT GGCCCGCCAG
AAACAGGTAT CGCTGGGTGA GTTGCAGGAC GCGGAATGGC TGTTGCGCGA GCCGGGTTCA
GGCACCCGTG AAGAGGTCGA GCACCTGTTG CTCAGGCACT TGCATGATCT GCAAGACCTG
CGCGAGATAG GCAGCTCCGA GGCGATAAAG CGCACCCTGG CTCAGGGCAT CGGCATCAGT
TGCCTGTCCC GTCGGGTGGT GGCTGACTTG CTGGCGAGCG GGCAGTTAAA AGCGCTCGCT
AGCCCATTGC CGCCGTTGAA TCGGCGCTTT TTCATGATCC GGCACCGCGA CAAGTTCATT
TCGCCGAGTC TGGAGCGTTT CCGCGAAGCC TGTCGCCAGG CCACCGATCA GGCGGCCACG
TTGCGCCACG GCTTGAGCCA CAACGCCAGC CCGACCAGCA GCACCACACC ATAA
|
|---|
| Protein sequence | MRLNLRQLQI FCAITRFGST TSAGNALALS QSATSAALNE LEGALGTRLF DRVGKRLVLN
DSGQSLLPRA MKMLENAQQI EDSFLLPDTT LNARLRIGSS STIGNYELPS IVGALRESAP
LLRVDVDIGN SALIARKVAR FEIVMGLIEA PCHLPELIAE PWSVDEMVIV AGINHPLARQ
KQVSLGELQD AEWLLREPGS GTREEVEHLL LRHLHDLQDL REIGSSEAIK RTLAQGIGIS
CLSRRVVADL LASGQLKALA SPLPPLNRRF FMIRHRDKFI SPSLERFREA CRQATDQAAT
LRHGLSHNAS PTSSTTP
|
|---|
| |