Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3520 |
Symbol | |
ID | 1185185 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 3971652 |
End bp | 3972113 |
Gene Length | 462 bp |
Protein Length | 153 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637394873 |
Product | universal stress protein family |
Protein accession | NP_793300 |
Protein GI | 28870681 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0564413 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCATACG AACACATTCT GGTTGCCATT GACCTCACCG ATGAGTGTGA TCCGGTCATC CGCCGCGCCA GCCTGCTGGC CAAAGCCAGC GGCACAAAGT TGTCGATCGT GCACATCGTC GAACCTATGG CGATGGCTTT CGGCGGCGAT GTACCCATGG ACCTCTCGCA ATTGCAGCAA CAGCAATTCG ACCAGGCCAA GGAAAAACTC AAGCAGGTAC AGGACAAATA CAAAGACCTG GACGTCAAGT GGGGCGAAAG CCACTTGGTC TACGGTCAGC CACGCCAGGA AATCCATCAG TTGGCGAAGA ATCAGGCATG CGACCTGATC GTCGTCGGCA GCCATGGTCG CCACGGCCTG GCCTTGCTGC TCGGCTCCAC TGCCAATGAC GTTCTGCACG GTGCGCCTTG CGATGTGCTG GCAGTGAGCC TCAAAAAAGC GGATGCCCGC AAGCCGGAGT GA
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Protein sequence | MPYEHILVAI DLTDECDPVI RRASLLAKAS GTKLSIVHIV EPMAMAFGGD VPMDLSQLQQ QQFDQAKEKL KQVQDKYKDL DVKWGESHLV YGQPRQEIHQ LAKNQACDLI VVGSHGRHGL ALLLGSTAND VLHGAPCDVL AVSLKKADAR KPE
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