| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3460 |
|---|
| Symbol | |
|---|
| ID | 1185125 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3902047 |
|---|
| End bp | 3902979 |
|---|
| Gene Length | 933 bp |
|---|
| Protein Length | 310 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637394813 |
|---|
| Product | D-isomer specific 2-hydroxyacid dehydrogenase family protein |
|---|
| Protein accession | NP_793240 |
|---|
| Protein GI | 28870621 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1052] Lactate dehydrogenase and related dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACAACGG TATTGGTGCT GGTCGAAAAT CTGGACACGT ATTTGCCGAT TCTGGAAAGC
AGCGGCTTCC AGTTGATTCG CGCCCCGACG GCCGAAAAAC GCGCCGAAGC GATTGCCACT
CACGGGCAGA ACATCAGCGC TGTTGTCACG CGTGGGCCAC TGGGGTTTTT CGCCGGGGAA
ATGGACGCGT TGCCGCACCT GCGCATCATT TGTGTGAGCG GTGCCGGCTA CGAGAAGGTC
GATTTGCCCG CTGCACAGGC ACGCGGTATT ACCGTCACCA ATGGCGCCGG GGTCAACGCG
CCTACCGTGG CCGATCATGC ACTGGCATTG TTACTTTCGC TGGTGCGCGA CATTCCACAG
GCAGACGCCT CGGTACGCCG CAGTGAGTGG CGCAAGGCTG TGCGTCCCTC ACTGGCAGGC
AAGCGCCTGG GGATCATCGG CCTGGGGGCG GTAGGTTTGG CGATCGCCAA GCGTGCGGCT
GCATTCGACA TCGTCATCGG CTATCACAAC CGCAAGCCGC GTCACGACTG CAGCTACACC
TGGCATGAAA CGGCGCAGGC GCTGGCGGCC GAGTCGGACT TTTTGATGAT TGCCACGCCC
GGTGGCAACA GCACGCAACA TCTGGTCGAT GCGCAGGTGC TGGCAGCGCT GGGGCCTGAC
GGTTTTCTGG TCAATATTGC CCGCGCCAGC GTTGTGGACA CCGGCGCGCT GGTCAGTGCG
CTTGAGAATG AGCAGATTGC CGGGGCTGCG CTGGACGTTT TCGATGACGA GCCGAAGGTG
CCGGACGTGT TCAAGACCCT GAACAACGTG GTGCTCACGC CGCATGTGGC AGGCTTGTCG
CCCGAAGCGT CGAGGGACAG CGTGCAGAGG GTCAACGATA ACCTGCTGGC GTTCTTTTCC
GGCCAGCCGG TGCTCACGCC CATCACCGAG TGA
|
|---|
| Protein sequence | MTTVLVLVEN LDTYLPILES SGFQLIRAPT AEKRAEAIAT HGQNISAVVT RGPLGFFAGE
MDALPHLRII CVSGAGYEKV DLPAAQARGI TVTNGAGVNA PTVADHALAL LLSLVRDIPQ
ADASVRRSEW RKAVRPSLAG KRLGIIGLGA VGLAIAKRAA AFDIVIGYHN RKPRHDCSYT
WHETAQALAA ESDFLMIATP GGNSTQHLVD AQVLAALGPD GFLVNIARAS VVDTGALVSA
LENEQIAGAA LDVFDDEPKV PDVFKTLNNV VLTPHVAGLS PEASRDSVQR VNDNLLAFFS
GQPVLTPITE
|
|---|
| |