| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3438 |
|---|
| Symbol | iscS-3 |
|---|
| ID | 1185103 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3878597 |
|---|
| End bp | 3879778 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637394791 |
|---|
| Product | cysteine desulfurase |
|---|
| Protein accession | NP_793218 |
|---|
| Protein GI | 28870599 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1104] Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.134472 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGAGC CAGTGCTGTA TTTTGATTAC GCGGCTACCA CGCCCGTGGA CGAGCGAGTC
ATCAAGGTGA TGGTCGAGTG CCTGGGTGCA TCGGGTAATT TCGGCAACCC GGCATCCAGC
TCCCATTCAT TTGGGCAAAA CGCTCGCCGC GCGGTCGAGC ATGCTCGTGA GCAGGTTGCA
GGTCTGGTAG GCGCTCAGGC TTCGCAGATC ATCTGGACGT CCGGCGCGAC CGAATCCAGC
AACCTGGCGC TCAAGGGCGT GGCTCAGGAA CGCGCAAAAA GACTCGCAAG CCTGCCCGGT
CATATCATTA CCAGTCAGAT CGAACACAAG GCTACCCTCG ATACTGCCCG GCAGCTCGAG
GAGCAAGGCG TCGAGGTCAC CTGGCTGGCG CCGGACAGCG ATGGCCTGAT CACTGCCGAT
GCGGTCAGCG CCGCGTTGCG CGATGACACG TTTCTGGTCT CGCTGATGCT GGTCAACAAC
GAGTTGGGCA CGGTCAACAA TATTGCTGAA ATCGGCAGGC GCGTGCGCGG TCATGGCGCG
CTGTTGCACG TTGATGCGGC GCAGGGTGCT GGCAAGTTGC CGATTGATCT GAGTCGGCTG
GCGGTAGACC TGATGTCGTT CTCGGCACAC AAGATCTACG GCCCCAAGGG CATTGGTGCT
TTGTACGTTG GCCCGCGTGC ACAACAGCGG GTTCTGGCCC AGATTCACGG GGGCGGCCAC
GAATGCGGCT TGCGTTCAGG CACGTTGGCG ACGCATCAGA TCGCTGGAAT GGGCGCGGCC
TTCGCCCTTG CGGCCGACGT GCTCGACGCT GAAGTTCTTG AAACAGAACG GCTGAATCGT
CTTCTGCGCG AACGGTTGGC AGGGATTGCG GGGTTGTGTA TCAACGGCAG TCCGACGCAG
CGGATTGCCC ACACGCTCAG CTTTACGTTC GGCAACAATG ATCTGGACCT CCCCGCGCTA
GGCAAAACAC TCGCATTTTC TTCCACTTCC GCCTGCAACT CGGCGAAGAA TGTGCCTTCA
CATGTCCTGC TGGCGTTGGG CCTGAGCCCG CAGGCTGCCA GCCAGACCAT CCGCTTGAGC
CTGGGGCGCT TCACTCGCGA ACAGGATATC GAGCGTGCCG CCGAGTCTAT CCGCGCCTGC
CTGATTCAGC CGGCATTCTG GGCGGTTGCT CAGTCTCGAT GA
|
|---|
| Protein sequence | MNEPVLYFDY AATTPVDERV IKVMVECLGA SGNFGNPASS SHSFGQNARR AVEHAREQVA
GLVGAQASQI IWTSGATESS NLALKGVAQE RAKRLASLPG HIITSQIEHK ATLDTARQLE
EQGVEVTWLA PDSDGLITAD AVSAALRDDT FLVSLMLVNN ELGTVNNIAE IGRRVRGHGA
LLHVDAAQGA GKLPIDLSRL AVDLMSFSAH KIYGPKGIGA LYVGPRAQQR VLAQIHGGGH
ECGLRSGTLA THQIAGMGAA FALAADVLDA EVLETERLNR LLRERLAGIA GLCINGSPTQ
RIAHTLSFTF GNNDLDLPAL GKTLAFSSTS ACNSAKNVPS HVLLALGLSP QAASQTIRLS
LGRFTREQDI ERAAESIRAC LIQPAFWAVA QSR
|
|---|
| |