Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3418 |
Symbol | |
ID | 1185078 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3854392 |
End bp | 3856611 |
Gene Length | 2220 bp |
Protein Length | 739 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637394769 |
Product | DNA primase domain protein |
Protein accession | NP_793201 |
Protein GI | 28870582 |
COG category | [R] General function prediction only [S] Function unknown |
COG ID | [COG4643] Uncharacterized protein conserved in bacteria [COG5545] Predicted P-loop ATPase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0205684 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTCGATG AGGTGCTGGG GCAATTCGCT GACTACGGCC TTGAGCCTGC TCAACCGTTG GTGTTCGGCA AGTTAACCCG TTGCAAGACA TCCCAGGACA AGGGAAAGGA AAAGAATGGT TGGTACGTCA TTCACGAGCA TCGGACTGAA AAGAACGAGT CGCTGATCTT CGGTAGTTTT GGTGACTGGC GTTCGGGTGA GTCGCAGAAG ATCAAGGTGA AAACTGGTCG AATGTCGCCT GAAGAGCGCG AGGTCATGCG CGTTCGCCAA GAGGACGCGA AGCGGCGCGC AGCCGAGATC GCCGCTAATG CTTCCCGTCG TGCGGCCAGT CGGGCGACGG GTATGTTCAA ACGCATGCCT GATAAAGGCA AAAGCGCCTA TTTGGATCGC AAGCAGATCG TGGGGTTTCG TGTTCGTTAC GCGCCGCGTT CAGGTGCTGT GCTGGTCCCG ATGAGCAATG CCCGCGATCA GATAGTCGGC CTGCAAGTGA TCTACCCGGA AAAGCAACAG GATACCGGGC GTGACAAATC CTACTGGCCC TACGGCATGT CAAAGGAAGG TGCGTTTCAT TTGATCGGCC CTGAGCCTGA GCCGGGTGAG CCGTTACTGA TCTGTGAGGG ATACGCCACT GGCGCTAGCC TGCACATGGC GACTTCATAC GGAGTCGCCA TTGCTTTTGA TGCGGGCAAC CTGCTCGCCG TCGCCAAGCT GATGCGTGAC CGTCTTCCCG GTCGACCGAT AATCATCTGC CGCGACGATG ACTGGAAGAC CAAACGCCCG AATGGGCAGC TTTGGAACCC GGGCGAGGAA AAGGCTACCA ACGCCGCCCT GATCGTTGGT GGTCAGGTGG TTGCGCCTAT CTTCTCGGTT GAGCGTCATG ACAAATGGAC TGACTTCAAT GATCTACATG TCGCCGAGGG TTTAGAGGCC GTCCGCCGTC AGGTGTTAGC GGTCGTCAGG CCCCCTGCAG CAGGTGGTTG GAAAGACCAG TTGGCACGCA GTGAGAACGG CGCGCTCATT GCCCATATGC AGAATATCGA GCTGATACTC GGCAACGACG AACGCTGGGC TGGTGTCATC AGCTTCAGTG CCTTCAGTTC CAAGATCGTC AAGTTGCGGG CCGCGCCTTA CGGCGGTGGT ACTGGCGACT GGGCTGATAT CGATGATATG CGGGTCATGA AGTGGCTTGC TCAGGTCTAC AACCTTCGGG TCAAAGCTTC CAGCGTCATC GAGGCGGTGA GCATTGTTGC TCACGACCAC GCCTTTCACC CAGTGCGTGA GTACCTGCAG AAGCTTGAGT GGGATCAAGT GCCGCGATTG GAACAATGGC TCATCGATGT CATGGGGGTA GAACCCTCTG AGTACGTCAA GAAGGTCGGT AAACGGTGGA TGATCTCGGC GGTCGCGAGG GTGATGCGGC CTGGCTGTAA GGCTGACTCG GTCCTGATCC TTGAAGGCGC ACAGGGCGCT GGTAAGTCAA CCGCGATGAG CATCCTCGGG GGCGACTGGT TCATGGACAC CCCCTTTGCG CTCGGCGACA AGGATGGCTT TCAGGCTATT CGTGGCAAGT GGATTGTCGA ACTGGGCGAG CTGGACAGCT TCAACAAGGC CGAGAGTACC AAGGCCAAGC AGTTCTTCTC TGCTTCGACA GACACCTACC GAGAAAGCTA TGGCCGGAGA ACAAACGACG TGCCACGCCA GTGTGTTTTC GTGGGTACGA CCAACCAAGA AGAATACCTT AAGGACGCGA CCGGCAACCG ACGCTACTGG CCTGTTGCTT GTACGAAGGT CGAACTTGAG CAACTACGTG AAATACGTGA TCAGTTGTGG GCTGAGGCGA TGTTTTGCTT CCAGGCAGGC GAGATCTGGT GGGTCAATCG TGACGAGTCG TCCATGTTTG CCGAGGCACA GGACGAGCGC TTCGTGGTCG ACGAGTGGGA AGGGCTGATT CTGAATTGGC TGGAAGAGTC ACAGATCGGC GAAACCACCA GCGGTAATGA GCTGTTGGGC ACAGCGCTGA AGCTTGATGC TGGGCACTGG GGCAAGCCAG AGCAGATGCG CGTCGGCGCA ATCATGCACC GCCTGGGGTG GAAGCGGGCG CGATCATCGG TGCTGTCGAA GAGTGGCTTA CGACAGTGGG TATACAAAAA GCCCGCGAAC TGGGGCCGGA CGTCAGATCT GGTTGTCGAG AAGTTTGATG AGCCGTGCTT CGATGATTAA
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Protein sequence | MLDEVLGQFA DYGLEPAQPL VFGKLTRCKT SQDKGKEKNG WYVIHEHRTE KNESLIFGSF GDWRSGESQK IKVKTGRMSP EEREVMRVRQ EDAKRRAAEI AANASRRAAS RATGMFKRMP DKGKSAYLDR KQIVGFRVRY APRSGAVLVP MSNARDQIVG LQVIYPEKQQ DTGRDKSYWP YGMSKEGAFH LIGPEPEPGE PLLICEGYAT GASLHMATSY GVAIAFDAGN LLAVAKLMRD RLPGRPIIIC RDDDWKTKRP NGQLWNPGEE KATNAALIVG GQVVAPIFSV ERHDKWTDFN DLHVAEGLEA VRRQVLAVVR PPAAGGWKDQ LARSENGALI AHMQNIELIL GNDERWAGVI SFSAFSSKIV KLRAAPYGGG TGDWADIDDM RVMKWLAQVY NLRVKASSVI EAVSIVAHDH AFHPVREYLQ KLEWDQVPRL EQWLIDVMGV EPSEYVKKVG KRWMISAVAR VMRPGCKADS VLILEGAQGA GKSTAMSILG GDWFMDTPFA LGDKDGFQAI RGKWIVELGE LDSFNKAEST KAKQFFSAST DTYRESYGRR TNDVPRQCVF VGTTNQEEYL KDATGNRRYW PVACTKVELE QLREIRDQLW AEAMFCFQAG EIWWVNRDES SMFAEAQDER FVVDEWEGLI LNWLEESQIG ETTSGNELLG TALKLDAGHW GKPEQMRVGA IMHRLGWKRA RSSVLSKSGL RQWVYKKPAN WGRTSDLVVE KFDEPCFDD
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