| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3412 |
|---|
| Symbol | |
|---|
| ID | 1185072 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3849835 |
|---|
| End bp | 3851859 |
|---|
| Gene Length | 2025 bp |
|---|
| Protein Length | 674 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637394763 |
|---|
| Product | terminase, large subunit |
|---|
| Protein accession | NP_793195 |
|---|
| Protein GI | 28870576 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5525] Bacteriophage tail assembly protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCACTG GATACGCAGA CGGTGCCGAG GTGTACCGCG AGGCGTATTG CCGTGGGCTT
GAGCCCGACC CGGAGCTTTG GGTCGATGAA TGGGCCGATG AGTACATGCG CATCCCGCGT
GACACTGGAG CCGCAGAGCC CGGCCAATAT CGAACGGCCC GGACACCCTA TGCCCGCGAG
CCCATGCGGT GCCTGTCACC GGCTCACCCC TGCAAACGGG TCGTCACAAT GGTGGCGTCG
CAGTTGATGA AAACCCAGAT CGCTTTGAAC TGGATCGGCG CGCTGATTCA CATGTCGCCT
TCAAACATCC TGACATTGCT GCCCAGCCTG AGCCTGGCGA AGCGAGTGTC AGCGCGGATC
AGCAAGACCA TCAATGCCAC TCCGGTCTTG CGCGAACGTG TGGCCTCACC GCGCTCGCGT
GACGCACGCA ACACGATGGA CACCAAAGAG TTTGAAGGCG GGGCGTTGTT CGCCACCACA
GCCGGTTCTG CGGCGAACCT TGCTGAGCTG TCTGCTCGGT TCGTCTACGG CGACGAGGTG
GATCGCTGGG ATGTGGACGT TGATGATGAG GGTGATCCGA TAGAACTGGC CGAGACGCGG
GGCAGTACCT TCGGCCGCAA CGCCAAGTTT TACTTCTCCA GCTCGCCGAC CATCAAGGGC
GCATCGCGGA TTGATGATCT GTTCTCCACC AGCGACCAGC GCTACTACTA CGTGCCATGC
CCATCGTGTG GGCACATGCA AACCCTGGAG TGGGAACGCC TGCTGTACTC GCCTGATTTC
AGCACCGTAC ATTACCAGTG CGCCGGGCCT GACTGCGACG TACTGATCGA GGAGTTTCAC
AAGGGTGACA TGCTCGCCCG TGGCGAATGG CGTTCACATG CCGACGGGGA CGGTGAGACG
GTGGGTTTCC ACCTCAATGC GTTGTATGCC CCGCTGGGCT GGCAGAGTTG GTCATCACTG
GCCAAGCAAT ATGAGAAGGC CAAAAAGGCT CAGGATCGCG GCGACCTTGA GCCCATGCAG
GTGTTTTACA ACACCCGCCT TGCCAAGGTA TGGGACAGCG CACAAGAGCA AACAAAAGCC
GCGGTGCTGC AAGCCAGAGC CCTGCTGGAA GACTACGTGT TGGGCACCAT GCCCACTGGT
GTTCTGTCGC TGGTGTCTGC AGTCGACGTG CAGGCTAACC GTCTTGAAAT GATGGTCGTA
GGTTGTGGCG AGGGCATGGA GCGCTGGATC GTCGACTTTC AGGTGATCAT GGGCGACCCC
GCCGATGATC GCACCTGGCT GGCACTGGAC GAAAAACTCA AAGAGCGTTA CCGCCATCCT
TGTGGCGTCA GCTTGGCGAT CCTGGCAACT GCTGTCGACT CCGGTGGACA CCACACCCAC
GAGGTCTATC AGTTCTGTCG CGTTCGGCGT TGGCGCAATG TCTTCGCCAT CAAAGGCGCA
AGCAAACCCG GCAAGCCGGT TATCGCTCAA CGTCCCTCAC TGGTGGACGT GACGTGGAAA
GGCCAGACCG AGCGCAACGG TGCGGAGCTT TGGATGGTGG GTACCGACAC CGCAAAGGAC
TGGATCTACA ACCGCTACCA CTTGGAAAGC GGGCCGGGCG CGTTGCATTT CCCCAAGGAT
TTGCCCGATG ACTTCTTTGC CCAATGCGTC GCCGAACGCA AGGTTACTCG CTACGTCAAA
GGCTTCAAAC GCATCGAGTG GGTGAAGGGC AAGGCAGAGC GCAACGAAGC GCTGGACTTG
CTGGTGTACA GCCTGGCGAT GGCGCATTAC CTGGGGCTGC ATCGATACGG CGAGCATGAC
TGGGGCAGGC TCAAAAATGC CTTGGCTCAA GCCGGTCTGT TCGACGACAC CGGTCACGCA
AAAGCCCCTG TGGCCGAGCG CCTGAGTGTC GAGCCTAGAC CTGAACCGAA GCCGGAACCT
CGACCCCAGC CTGTGGCTGC TGCTGCCGTT CAAGCACCGG CGCGTCCGGC CCCGCAACCC
CCGCAACGCC GTGCTTCCAC CAGCGGCTAT CTGAAGAGAC GTTGA
|
|---|
| Protein sequence | MPTGYADGAE VYREAYCRGL EPDPELWVDE WADEYMRIPR DTGAAEPGQY RTARTPYARE
PMRCLSPAHP CKRVVTMVAS QLMKTQIALN WIGALIHMSP SNILTLLPSL SLAKRVSARI
SKTINATPVL RERVASPRSR DARNTMDTKE FEGGALFATT AGSAANLAEL SARFVYGDEV
DRWDVDVDDE GDPIELAETR GSTFGRNAKF YFSSSPTIKG ASRIDDLFST SDQRYYYVPC
PSCGHMQTLE WERLLYSPDF STVHYQCAGP DCDVLIEEFH KGDMLARGEW RSHADGDGET
VGFHLNALYA PLGWQSWSSL AKQYEKAKKA QDRGDLEPMQ VFYNTRLAKV WDSAQEQTKA
AVLQARALLE DYVLGTMPTG VLSLVSAVDV QANRLEMMVV GCGEGMERWI VDFQVIMGDP
ADDRTWLALD EKLKERYRHP CGVSLAILAT AVDSGGHHTH EVYQFCRVRR WRNVFAIKGA
SKPGKPVIAQ RPSLVDVTWK GQTERNGAEL WMVGTDTAKD WIYNRYHLES GPGALHFPKD
LPDDFFAQCV AERKVTRYVK GFKRIEWVKG KAERNEALDL LVYSLAMAHY LGLHRYGEHD
WGRLKNALAQ AGLFDDTGHA KAPVAERLSV EPRPEPKPEP RPQPVAAAAV QAPARPAPQP
PQRRASTSGY LKRR
|
|---|
| |