| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3398 |
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| Symbol | |
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| ID | 1185058 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 3839330 |
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| End bp | 3841399 |
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| Gene Length | 2070 bp |
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| Protein Length | 689 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637394749 |
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| Product | tail fiber protein H, putative |
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| Protein accession | NP_793181 |
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| Protein GI | 28870562 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG5301] Phage-related tail fibre protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.87622 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCGATC AGACTTCGCA ATTCTTTGCC ACCCTGACTA ATGTCGGTGC GGCCAAGCAG
GCCAACGCCG ATGCCCTCGG CGTGCCTTGG AAAATAGCTC AAATGGGTGT GGGGGATGCC
AATGGCACCG ACCCTGTGCC CGATGCTTCA CAGAAAAAAC TGATCAACGA ACGCCGCCGT
GCACCGCTCA ATCAGCTCAA GGTTGATCCA GCCAACAACG CGATCATCAT CGCCGAGCAG
GTTATCCCGG CAGAGGTGGG CGGCTTCTGG ATTCGTGAAA TTGGCCTGTA CGACACGGAC
GGGGATCTGG TGGCGGTTGC GAACTGCGCG CCGTCCTTCA AACCTTTGCT GGCACAGGGA
TCTGGGCGCA CGCAGATCGT GCGCATCAAC CTGCTGGTCA GCAACACCAG CAACGTCGAG
CTGCGTATTG ACCCAACGGT TGTGCTGGCC ACACGTTCCT TTGTGGACCT GCGGATTCAG
GAAGAGCTTT CCAGGCTCGA CAATAAACAA TCGGTTCGTG CTGCCACGAC CGGCCCGGTG
GTCCTTGCTG GCATCCAGTC GGTCGACGGC GTTGCGCTTG TCGCAGGCGA CCGGGTACTG
GTGAAAAATC AGGCCAGCGG CAAAGATAAT GGTTTGTACT CGGTCGTTGC GGGTGGTGCC
TGGTTACGCG TTGTTGACGC GGATGTGAGC GTGGAGGTGA CACCTAACCT GATGGTTAGC
GTCGAGCAGG GTGACGCGTT GTTCGACACG CTCTGGCAGT TGACCACAAA CGCGCCAATT
ACCTTGGGTA CGACTGCGCT GGCGTTCGAG CAAGTGGCAG GTCCGACTGG CGTTTTACCC
GGTACTTACA ACAGGGTCAC GGTAGACCGA CGCGGCCTGG TGATGGCCGG TTTCAACCCG
ACCACCCTGG GCGGTTACGG TATCGCTGAT GCTTACAGCA AGACGGAAAT TGATGCGCGG
GTGGCGGCGT TACAGCCCAA GCTCGGGTTT GTTCCTGTGC AGCAGGGCAC TGGCGCGGGC
CAACTGAACA ATCAGGTCAG GCTCGGCTGG TCGGGTAGCG GGCTTAAGGC GGCGGTCGAT
AATACTGATT TAGGCAACCT CTGGTATTCG GGCAACTTTG ATCCTGCCAC CAAGGCCAAC
GTGGGCAGCA CGTTGTTTGC TTACGGCATC ACCGATGCCT ACACCAAGGC GGAGGTTGAC
CAGCGAGTGT CCGAGCGGGC TTTAAGGACA GAGGTCTATG CCAAAGCCGA TGTCTACACC
AAGGCTGAAA CCGATGCGCG GGATTCGCAA CGACCGTTGG CGGACAGCAT CACGAACATT
GGGCTTGCGG CCAACGACCC TGCGTCGCCC TATATGCGCC GCGCCAGTGA CAACACGACG
TATTTTCTTC AGACAAAGCT TGGCTTTGTT CCTGTCCAGC AAGGCACGGG TGCAGGCCAG
TTAAACAACC TGATCAAGAT CGGATATACG TCCGCAGGTC AGGTTAAGTT GGCGGTCGAT
AACACCGACT TCGGGAATCT CTGGTATTCC GGCAACTTTG ATCCGTCCAA AAAAGCCAAC
GTCGGCAGCA CGTTGTTTGC TTACGGCATT ACCGATGCCT ACACCAAGAA TGAAACAGAT
GCTCGTGATA TGGAGCGGCC TCTAAAAACT GAGGTTTATG CCAAGGCCGA TGTTTACACA
AAGGCCGAAA CTGACACGCG CGTTGCGACA CGGCCTGTCG CTGACTCAAT CACGCATGTG
GGCTTTGCAG GAGATAATAC AGCTGCGCCC TACATGCGGC GCGCTGCCGA CAGTGCGGTT
TACTATCTGG TCAGCGACCT GAATCTCGGG GCCAAAGTGG CGGCGCAGGG GCTTACCGGC
ATTGGGCAAT ACGCATTTGC GCGAGTCATT ACCGCCTACG GAAATTCAAT TAACCAGGGC
ACTTCAGTCC CCGGCTCTAA CCTTATTTTC AGTTCCACTG CTGTGGGTGA CGGCACAAGC
AGCAACTCCG GCGCTATCGC AATAGGTGTT TGGCGCGCCC ATGGTGCTTT CAACAATACA
GAGCGCACGC TCTTTCAACG AATTCAGTAG
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| Protein sequence | MIDQTSQFFA TLTNVGAAKQ ANADALGVPW KIAQMGVGDA NGTDPVPDAS QKKLINERRR
APLNQLKVDP ANNAIIIAEQ VIPAEVGGFW IREIGLYDTD GDLVAVANCA PSFKPLLAQG
SGRTQIVRIN LLVSNTSNVE LRIDPTVVLA TRSFVDLRIQ EELSRLDNKQ SVRAATTGPV
VLAGIQSVDG VALVAGDRVL VKNQASGKDN GLYSVVAGGA WLRVVDADVS VEVTPNLMVS
VEQGDALFDT LWQLTTNAPI TLGTTALAFE QVAGPTGVLP GTYNRVTVDR RGLVMAGFNP
TTLGGYGIAD AYSKTEIDAR VAALQPKLGF VPVQQGTGAG QLNNQVRLGW SGSGLKAAVD
NTDLGNLWYS GNFDPATKAN VGSTLFAYGI TDAYTKAEVD QRVSERALRT EVYAKADVYT
KAETDARDSQ RPLADSITNI GLAANDPASP YMRRASDNTT YFLQTKLGFV PVQQGTGAGQ
LNNLIKIGYT SAGQVKLAVD NTDFGNLWYS GNFDPSKKAN VGSTLFAYGI TDAYTKNETD
ARDMERPLKT EVYAKADVYT KAETDTRVAT RPVADSITHV GFAGDNTAAP YMRRAADSAV
YYLVSDLNLG AKVAAQGLTG IGQYAFARVI TAYGNSINQG TSVPGSNLIF SSTAVGDGTS
SNSGAIAIGV WRAHGAFNNT ERTLFQRIQ
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