Gene PSPTO_3375 details

Gene Information

• Locus tag: PSPTO_3375
• Symbol: nuoL
• ID: 1185034
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 3813897
• End bp: 3815750
• Gene Length: 1854 bp
• Protein Length: 617 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 637394726
• Product: NADH dehydrogenase I, L subunit
• Protein accession: NP_793158
• Protein GI: 28870539
• COG category: [C] Energy production and conversion; [P] Inorganic ion transport and metabolism
• COG ID: [COG1009] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit
• TIGRFAM ID: [TIGR01974] proton-translocating NADH-quinone oxidoreductase, chain L

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.762716
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATCTTC TCTTTCTGAC TTTCGTATTC CCCCTCATCG GCTTTCTGTT GCTGTCGTTC 
TCTCGCGGAC GCATTTCGGA AAACCTTGCG GCGCTGATTG GCGTCGGCTC TATCGGCCTG 
TCAGCCATCG TCACGGCCTG GGTCATCTGG CAATTCAATG TCGCGCCGCC AGAAGGTGGT 
CACTACACCC AAGTGCTGTG GCGCTGGATG GACGTTGATG GCTTCCAGCC CAACTTTGCG 
CTGTATCTGG ACGGTTTGTC CGTCACGATG CTGGGCGTGG TGGTGGGCGT GGGCTTTCTG 
ATCCACCTGT TTGCGTCCTG GTACATGCGC GGCGAGGCCG GTTACTCGCG CTTCTTCGCT 
TACACCAACC TGTTCATTGC CAGCATGCTG TTCCTGATTC TGGGCGACAA CCTGCTGTTC 
CTGTACTTCG GTTGGGAAGG CGTGGGCCTG TGCAGCTACC TGTTGATCGG TTTCTATTAC 
AGCAACCGCA ACAACGGTAA CGCAGCACTC AAGGCATTTA TCGTGACGCG AATCGGCGAC 
GTGTTCATGG CCATAGGCCT GTTCATCCTG TTCCAGCAGT TGGGCACACT CAACGTGCAG 
GAACTGCTGG TCAAGGCACC GGAACACTTC AAGGTCGGCG ATTTCTGGAT CGTACTGGCA 
ACGCTGATGC TGCTTGGTGG TGCTGTCGGC AAGTCTGCAC AGTTGCCGCT ACAAACCTGG 
CTGGCAGACG CAATGGCCGG TCCGACCCCG GTTTCGGCAC TGATCCACGC AGCAACCATG 
GTTACCGCGG GCGTCTACCT GATCGCGCGG ACTCATGGCC TGTTCGCGCT GGCACCGGAC 
ATTCTGCACC TGGTCGGCAT CGTGGGCGGC GTCACGCTGG TGCTGGCAGG TTTCGCAGCG 
CTGGTACAGA CCGATATCAA GCGTATCCTC GCCTACTCGA CCATGAGCCA GATCGGTTAC 
ATGTTCCTGG CGTTGGGCGT CGGTGCCTGG GAAGGCGCGA TCTTCCACCT GATGACTCAC 
GCTTTCTTCA AGGCTCTGTT GTTCCTTGCA TCCGGTGCGG TCATCGTTGC CTGCCACCAC 
GAGCAGAACA TCTTCAAGAT GGGCGGCCTG TGGAAGAAAC TGCCTCTGGC CTACGCCAGC 
TTCATTGTCG GTGGTGCTGC CCTGTCCGCC CTGCCGTTGC TGACTGCAGG TTTCTACTCC 
AAGGACGAGA TCCTTTGGGA AGCGTTTGCC AGCGGTAACA ACGGCTTGCT GTATGCCGGT 
CTGGCGGGTG CATTCATGAC CTCGCTGTAC ACCTTCCGCC TGATCTTCAT TGCGTTCCAC 
GGTGAAGCCA AAACCGAAGC GCACGCCGGT CACGGTATTG CCCACTGGTT GCCGCTGTCG 
GTGCTGATTG TGCTGTCGAC GTTCATCGGT GCGCTGATTA CCCCGCCACT GGCCGGTGTT 
CTGCCACAAA GCGTCGGGCA CGCCGGTGGC GAAGCCAAGC ACAGCCTGGA AATCGCCTCG 
GGTGCCATTG CCCTGGCCGG TATCCTGCTG GCCGCGTTGC TGTTTCTCGG CAAGCGTCGT 
CTGGCAACGG CTATCGCCAA CAGCGGTCCG GGCCGTTTCC TCTCGGCCTG GTGGTTCGCG 
GCCTGGGGCT TCGACTGGAT CTACGACAAG CTTTTCGTCA AACCCTATCT GGCGATCAGT 
CATGTGCTGC GTAGCGATCC GTTCGACCGC ACCATCGGCT TGATCCCACG TCTGGTCAAA 
GGCGGTCATG ACACCATGAG CCGTACCGAG ACCGGCCAGC TGCGTTGGTA TGCTGCCTCG 
ATCACCGTGG GTGCCGTTCT GGTACTCGGT GCCGTCGTTC TGGTTGCGGT CTGA 

 

Protein sequence

MNLLFLTFVF PLIGFLLLSF SRGRISENLA ALIGVGSIGL SAIVTAWVIW QFNVAPPEGG 
HYTQVLWRWM DVDGFQPNFA LYLDGLSVTM LGVVVGVGFL IHLFASWYMR GEAGYSRFFA 
YTNLFIASML FLILGDNLLF LYFGWEGVGL CSYLLIGFYY SNRNNGNAAL KAFIVTRIGD 
VFMAIGLFIL FQQLGTLNVQ ELLVKAPEHF KVGDFWIVLA TLMLLGGAVG KSAQLPLQTW 
LADAMAGPTP VSALIHAATM VTAGVYLIAR THGLFALAPD ILHLVGIVGG VTLVLAGFAA 
LVQTDIKRIL AYSTMSQIGY MFLALGVGAW EGAIFHLMTH AFFKALLFLA SGAVIVACHH 
EQNIFKMGGL WKKLPLAYAS FIVGGAALSA LPLLTAGFYS KDEILWEAFA SGNNGLLYAG 
LAGAFMTSLY TFRLIFIAFH GEAKTEAHAG HGIAHWLPLS VLIVLSTFIG ALITPPLAGV 
LPQSVGHAGG EAKHSLEIAS GAIALAGILL AALLFLGKRR LATAIANSGP GRFLSAWWFA 
AWGFDWIYDK LFVKPYLAIS HVLRSDPFDR TIGLIPRLVK GGHDTMSRTE TGQLRWYAAS 
ITVGAVLVLG AVVLVAV