Gene PSPTO_3358 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3358 
SymboltrmU 
ID1185017 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp3795943 
End bp3797073 
Gene Length1131 bp 
Protein Length376 aa 
Translation table11 
GC content60% 
IMG OID637394709 
ProducttRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 
Protein accessionNP_793141 
Protein GI28870522 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 
TIGRFAM ID[TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 


Plasmid Coverage information

Num covering plasmid clones9 
Plasmid unclonability p-value0.125199 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGTGATC CAGCCCCCTC GAACTCAGAA ATGAAGCGCG TCATAGTCGG CATGTCCGGC 
GGCGTGGACT CTTCCGTTTC CGCCGTACTG CTCATGGAGC AGGGTTATCA GGTGGAAGGC 
TTGTTCATGA AGAACTGGGA AGAAGACGAC GGAACGGAAT ATTGCACCGC CCGCGAAGAC 
CTGGCAGACG CCCAGGCTGT GTGCGACAGG ATCGGTATCA AGCTGCACAC GGCCAACTTC 
GCCGCCGAGT ACTGGGACAA CGTCTTCGAG CACTTCCTCG AAGAGTACAA GGCCGGACGC 
ACGCCAAACC CGGACATCCT CTGCAACCGG GAAATCAAGT TCAAAGCCTT TCTGGACTAT 
GCCTTGATGC TGGGCGCCGA TCTGATTGCA ACCGGCCACT ATGTGCGCCG TCGCGATATC 
GACGGGCGTA CCGAGCTGCT CAAGGGCCTG GATCCGAACA AGGACCAGAG CTACTTCCTG 
CATGCCGTCG GTGGCGAACA AATCGCCCGG ACGCTGTTCC CGGTAGGCGA GCTGGAAAAA 
CCGCAAGTGC GCGCCATTGC CGAGAAACAC GGCCTGGCGA CGGCCAAGAA GAAGGATTCC 
ACCGGCATCT GCTTCATTGG CGAGCGCCGC TTCACCGATT TTCTGCGCCA ATACCTGCCC 
GCCCAACCCG GCGACATCAA GACCACCGAA GGCGAAGTCA TCGGTCGCCA CAGTGGCCTG 
ATGTACCACA CCATCGGTCA GCGCCAGGGC CTGGGCATTG GCGGCCTCAA GGACGCCAGC 
GACGACCCGT GGTACGTGCT GGTCAAGGAC CTGGACAACA ACGAACTGAT CGTTGGCCAG 
GGCAATGATC ATCCGTGGCT GTTTTCGCGG GCGCTGGTGT CTTCGGAAAT CTACTGGGTC 
AACCCGATCG ACCTGAGCAG CCCGCGCAAA CTCACCGCAA AAGTCCGTTA TCGTCAGAGC 
GACCAGCCGT GCACGCTGGA AAAAACCGCT GGCGGCTACC GGGCCACATT CGATGACCCG 
CAACGCGCTG TAACGCCCGG CCAGTCCGTG GTGTTCTACG ATGGCGAAAT CTGTCTGGGC 
GGCGGCGTGA TCGAAATTGC CGAACCCTGG ACCAGCAAGG ACAAGCGTTG A
 
Protein sequence
MRDPAPSNSE MKRVIVGMSG GVDSSVSAVL LMEQGYQVEG LFMKNWEEDD GTEYCTARED 
LADAQAVCDR IGIKLHTANF AAEYWDNVFE HFLEEYKAGR TPNPDILCNR EIKFKAFLDY 
ALMLGADLIA TGHYVRRRDI DGRTELLKGL DPNKDQSYFL HAVGGEQIAR TLFPVGELEK 
PQVRAIAEKH GLATAKKKDS TGICFIGERR FTDFLRQYLP AQPGDIKTTE GEVIGRHSGL 
MYHTIGQRQG LGIGGLKDAS DDPWYVLVKD LDNNELIVGQ GNDHPWLFSR ALVSSEIYWV 
NPIDLSSPRK LTAKVRYRQS DQPCTLEKTA GGYRATFDDP QRAVTPGQSV VFYDGEICLG 
GGVIEIAEPW TSKDKR