| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3356 |
|---|
| Symbol | |
|---|
| ID | 1185015 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 3793079 |
|---|
| End bp | 3795310 |
|---|
| Gene Length | 2232 bp |
|---|
| Protein Length | 743 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637394707 |
|---|
| Product | isocitrate dehydrogenase, NADP-dependent |
|---|
| Protein accession | NP_793139 |
|---|
| Protein GI | 28870520 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2838] Monomeric isocitrate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00178] isocitrate dehydrogenase, NADP-dependent, monomeric type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0469656 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAACC GCTCGAAGAT CATCTACACC TTCACCGACG AAGCTCCGGC CCTCGCCACC
TACTCGCTGC TGCCTATCAT CGAAGCTTTC ACAGCCTCCT CCGATATCGA CGTGGAAACG
CGCGACATCT CTCTGGCGGG CCGTGTTCTT TCCAGCTTCC CGGAGTCGCT TGGCGCCGAT
CAACAAGTGC CGGATCATCT CGCCGAGCTG GGCAAACTGG CCACCACGCC AGAAGCCAAC
ATCATCAAGC TGCCTAACAT CAGCGCTTCG GTCCCACAAC TGAAAGCGAC CATCAAGGAG
CTTCAGGAGC AGGGCTTCAA CATCCCCGAC TACCCGGAAA ACCCTGCCAC TGACGCGGAA
AAAGAAATCC GCGCGCGTTA CGACAAGACC AAGGGCAGCG CTGTAAACCC GGTTCTGCGC
GAAGGCAACT CCGATCGTCG TGCCCCACTG TCGGTCAAGA ACTACGCGCG CAAGCACCCG
CACAAAATGG GCGCCTGGGC TTCCGACTCC AAGGCCCACG TTGCGCACAT GAGCAACGGC
GACTTCTACG GCAGCGAAAA AGCCGCGCAG ATCGAAGCTG ACAGCACTGT AAAGATCGAA
CTGGTCGCTC AGGACGGCAC CACCACCGTC CTGAAAGAAA AAACGGCCCT GAAGGCCGGC
GAGATCGTCG ACTGCTCGGT CATGAGCGCC AAAGCACTGC GCAGCTTCAT TGCCGCCGAG
ATCGAGGACG CCCGCAAGCA AGGCGTTCTG TTCTCGGTGC ATTTGAAAGC CACCATGATG
AAGATCTCCG ACCCGATCAT GTTCGGTCAG ATCGTCGCCG AGTTCTACAA GGATGCGCTG
ACCAAGCACG CTGACACGCT GAAACAGATC GGCTTCAGTC TGAACAACGG CATCGGTGAC
CTTTACGAGC GCATCAGCGC CCTGCCTGCC GAGAAACAGG CGGAAATCAA GGCTGACATC
GAAGCGGTCT ACGCGGTTCG TCCACAGCTG GCGATGGTCA ACTCCGACAA GGGCATCACC
AACCTGCACG TACCGAGCGA CGTGATCGTC GACGCATCGA TGCCGGCCAT GATCCGTGAC
TCGGGCAAGA TGTGGGGCAC AGACGGCCAA CTGCACGATG CCAAAGCAGT GATCCCGGAT
CGTTGCTACG CCACCATCTA TCAAGCCGTC ATCGAAGACT GCAAGAAAAA TGGCGCTTTC
GACCCTACCA CCATGGGCAG CGTACCGAAC GTTGGCCTGA TGGCGCAGAA GGCCGAAGAA
TACGGCTCCC ACGACAAGAC TTTCCACATC CAGACCAATG GTGTGGTTCG TGTGACCGAC
GGCCAAGGCA ACCTGCTGAT GGAACAGAAC GTCGAAGCGG GCGATATCTG GCGCATGTGC
CAGGCCAAGG ACGCGCCGAT CCAGGACTGG GTCAAACTGG CGGTCAACCG CGCTCGCGCC
AGCAACACGC CGGCCATCTT CTGGCTGGAC GCTTCCCGCG CCCACGACAG CGTGATGATC
GAGAAAGTCC GCAAGTACCT GGGCGACCAC GATACGTCGG GCCTGGACAT CCAGATTCTT
TCGCCAGTCG ACGCCATGAA GCTGACCCTG GAGCGCACTC GCGCCGGTAA GGACACCATT
TCGGTGACCG GTAACGTGCT GCGCGACTAC CTCACCGACC TGTTCCCGAT CATGGAACTG
GGCACCAGCG CGAAGATGCT GTCGATCGTT CCGCTGATGA ACGGTGGCGG CCTGTTCGAA
ACCGGCGCCG GCGGTTCGGC TCCCAAGCAT GTTCAGCAGT TCGTTGAAGA AAACTTCCTG
CGCTGGGATT CGCTGGGCGA GTTCCTGGCC CTGGCGGCCT CGCTGGAGCA CCTGGGTAAC
GCGTACAACA ACCCGAAAGC GCTGGTTCTG TCCAAAACCC TCGACCAGGC CACTGGCGAG
TTCCTGGATC GCAACAAGTC GCCTTCGCGC AAGGTCGGCG GTATCGACAA CCGCGGCAGC
CATTTCTACC TGACCCTGTT CTGGGCGCAG GCACTGGCTG CTCAGGATGA CGACGCAGAC
CTCAAGGCGC AGTTCACGCC TCTGGCCAAA ACCCTGACCG ACAACGAAGA AAAAATCGTT
GCCGAGCTGA ATGCCGTTCA AGGCAAGCCA GTGGACATTG GCGGTTACTA TTTCGCCAAT
CCGGAAGTAA CCAGCAAAGC CATGCGCCCT AGCGCAACGC TCAACGCAGC TATTGATGCG
TTGAAAGCGT AA
|
|---|
| Protein sequence | MSNRSKIIYT FTDEAPALAT YSLLPIIEAF TASSDIDVET RDISLAGRVL SSFPESLGAD
QQVPDHLAEL GKLATTPEAN IIKLPNISAS VPQLKATIKE LQEQGFNIPD YPENPATDAE
KEIRARYDKT KGSAVNPVLR EGNSDRRAPL SVKNYARKHP HKMGAWASDS KAHVAHMSNG
DFYGSEKAAQ IEADSTVKIE LVAQDGTTTV LKEKTALKAG EIVDCSVMSA KALRSFIAAE
IEDARKQGVL FSVHLKATMM KISDPIMFGQ IVAEFYKDAL TKHADTLKQI GFSLNNGIGD
LYERISALPA EKQAEIKADI EAVYAVRPQL AMVNSDKGIT NLHVPSDVIV DASMPAMIRD
SGKMWGTDGQ LHDAKAVIPD RCYATIYQAV IEDCKKNGAF DPTTMGSVPN VGLMAQKAEE
YGSHDKTFHI QTNGVVRVTD GQGNLLMEQN VEAGDIWRMC QAKDAPIQDW VKLAVNRARA
SNTPAIFWLD ASRAHDSVMI EKVRKYLGDH DTSGLDIQIL SPVDAMKLTL ERTRAGKDTI
SVTGNVLRDY LTDLFPIMEL GTSAKMLSIV PLMNGGGLFE TGAGGSAPKH VQQFVEENFL
RWDSLGEFLA LAASLEHLGN AYNNPKALVL SKTLDQATGE FLDRNKSPSR KVGGIDNRGS
HFYLTLFWAQ ALAAQDDDAD LKAQFTPLAK TLTDNEEKIV AELNAVQGKP VDIGGYYFAN
PEVTSKAMRP SATLNAAIDA LKA
|
|---|
| |