| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3353 |
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| Symbol | clpA |
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| ID | 1185012 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 3789289 |
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| End bp | 3791562 |
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| Gene Length | 2274 bp |
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| Protein Length | 757 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637394704 |
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| Product | ATP-dependent clp protease, ATP-binding subunit ClpA |
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| Protein accession | NP_793136 |
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| Protein GI | 28870517 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
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| TIGRFAM ID | [TIGR02639] ATP-dependent Clp protease ATP-binding subunit clpA |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.427297 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAAACC GTGAGCTCGA AGTCACCCTC AATCTTGCCT TCAAGGAGGC ACGTTCGAAG
CGTCATGAGT TCATGACGGT CGAGCATCTC CTGCTGGCTC TATTGGATAA TGAGGCTGCA
GCCACTGTCC TGCGTGCCTG CGGCGCAAAC CTCGATAAAC TCAAGCATGA TCTGCAGGAG
TTCATCGACT CCACCACGCC GCTGATCCCC GTCCACGACG AGGACCGCGA GACTCAACCG
ACGCTGGGTT TTCAGCGCGT TCTGCAACGC GCTGTCTTCC ACGTGCAAAG CTCTGGCAAG
CGCGAAGTGA CTGGCGCCAA CGTGCTGGTC GCAATTTTCA GTGAGCAGGA AAGCCAGGCC
GTATTTCTGC TCAAGCAGCA GAGTGTGGCC CGGATTGATG TCGTCAACTA CATTGCCCAC
GGTATCTCCA AGGTTCCAGG GCATGGCGAA CACTCTTCTG AAGGTGAGCA AGATATGCAG
GACGACGAGG GCGGTGAAGC ATCTTCCTCA GGCAATCCTC TGGATGCCTA TGCCAGCAAT
CTGAACGAAT TGGCGCGTCA GGGGCGCATC GATCCACTGG TCGGCCGCGA AAGCGAAGTC
GAGCGTGTGG CGCAGATTCT CGCTCGTCGG CGCAAGAACA ACCCGCTGCT GGTCGGAGAG
GCCGGGGTGG GTAAAACCGC CATTGCCGAG GGTCTTGCCA AGCGTATCGT CGACAATCAG
GTGCCTGACC TGCTTGCCAA CAGCGTTGTC TATTCGCTTG ACCTGGGTGC CTTGCTGGCG
GGGACCAAAT ACCGTGGTGA TTTCGAGAAG CGCTTCAAGG CGCTGCTCAA TGAGCTGCGT
AAGCGTCCGC AGGCGATCCT GTTCATCGAC GAGATCCACA CGATCATTGG TGCCGGTGCG
GCGTCCGGCG GGGTGATGGA TGCCTCGAAC CTGCTCAAGC CGATGCTGTC TTCCGGCGAG
ATTCGCTGCA TCGGTTCAAC GACGTTCCAG GAGTTTCGCG GGATTTTCGA GAAGGACCGT
GCCTTGGCAC GTCGCTTCCA GAAAGTCGAC GTGTCCGAGC CTTCGGTCGA AGACACTATC
GGAATCCTGC GCGGCCTGAA AAGCCGTTTC GAGCAGCATC ACAGCATCGA ATACAGCGAT
GAAGCCTTGC GCGCCGCCGC TGAGCTCGCC TCGCGCTACA TCAATGACCG TCATATGCCC
GACAAGGCCA TCGACGTGAT TGACGAAGCG GGTGCCTATC AGCGTCTGCA GCCGGTCGAA
AAACGCGTCA AGCGCATCGA TGTTCCGCAG GTTGAAGACA TTGTCGCCAA GATCGCCCGT
ATTCCGCCGA AACACGTCAA CAGTTCCGAC AAGGAGCTGC TGCGTAACCT GGAGCGCGAT
CTCAAGCTGA CGGTGTTTGG TCAGGATGCG GCGATCGATT CGCTGTCTAC GGCCATCAAG
CTGTCGCGCG CAGGGCTCAA GTCGCCGGAC AAGCCGGTCG GTTCCTTCCT GTTCGCCGGG
CCTACCGGTG TCGGCAAGAC CGAAGCTGCT CGTCAGCTGG CAAAAGCCTT GGGTGTCGAG
CTGATTCGTT TTGACATGTC CGAGTACATG GAGCGTCACA CCGTTTCTCG CTTGATCGGT
GCGCCTCCAG GCTACGTCGG TTTCGATCAG GGCGGTCTGC TGACGGAAGC CATTACCCGG
CAGCCGCATT GCGTGCTGCT GCTCGATGAA ATCGAGAAAG CGCATCCGGA AGTCTTCAAC
CTGCTGTTGC AGGTGATGGA CCACGGTACG CTCACCGATA ACACCGGGCG CAAGGCGGAC
TTCCGCAACG TGATCGTGAT CATGACCACT AACGCCGGTG CTGAATCCGC GGCGCGGGCT
TCTATCGGTT TCACGCATCA GGACCACTCG TCTGATGCCA TGGAAGTGAT CAAGAAGAGC
TTCACGCCGG AGTTCCGCAA CCGTCTGGAC ACGATCATTC AGTTTGGTCG TCTCAGTCAC
GAAGTCATCA AGAGCGTGGT GGACAAGTTC CTTACCGAGC TTCAGGCTCA ACTGGAAGAC
AAGCGCGTAC TGCTCGAAGT CTCCGAGGCG GCAAGAAGCT GGCTGGCGCA GGGCGGTTAC
GATGCAGCGA TGGGCGCACG CCCGATGGCT CGCCTGATTC AGGACAAGAT CAAACGGCCG
TTGGCTGAAG AGATCCTGTT TGGCGAGTTG TCAGAGCATG GCGGCGTCGT GCACATCGAC
ATTCGTGATG GCGAGATCAC GTTCGATTTC GAAACCACGG CAGAAATGGC CTGA
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| Protein sequence | MLNRELEVTL NLAFKEARSK RHEFMTVEHL LLALLDNEAA ATVLRACGAN LDKLKHDLQE
FIDSTTPLIP VHDEDRETQP TLGFQRVLQR AVFHVQSSGK REVTGANVLV AIFSEQESQA
VFLLKQQSVA RIDVVNYIAH GISKVPGHGE HSSEGEQDMQ DDEGGEASSS GNPLDAYASN
LNELARQGRI DPLVGRESEV ERVAQILARR RKNNPLLVGE AGVGKTAIAE GLAKRIVDNQ
VPDLLANSVV YSLDLGALLA GTKYRGDFEK RFKALLNELR KRPQAILFID EIHTIIGAGA
ASGGVMDASN LLKPMLSSGE IRCIGSTTFQ EFRGIFEKDR ALARRFQKVD VSEPSVEDTI
GILRGLKSRF EQHHSIEYSD EALRAAAELA SRYINDRHMP DKAIDVIDEA GAYQRLQPVE
KRVKRIDVPQ VEDIVAKIAR IPPKHVNSSD KELLRNLERD LKLTVFGQDA AIDSLSTAIK
LSRAGLKSPD KPVGSFLFAG PTGVGKTEAA RQLAKALGVE LIRFDMSEYM ERHTVSRLIG
APPGYVGFDQ GGLLTEAITR QPHCVLLLDE IEKAHPEVFN LLLQVMDHGT LTDNTGRKAD
FRNVIVIMTT NAGAESAARA SIGFTHQDHS SDAMEVIKKS FTPEFRNRLD TIIQFGRLSH
EVIKSVVDKF LTELQAQLED KRVLLEVSEA ARSWLAQGGY DAAMGARPMA RLIQDKIKRP
LAEEILFGEL SEHGGVVHID IRDGEITFDF ETTAEMA
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