| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3348 |
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| Symbol | lolA |
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| ID | 1185007 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 3783812 |
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| End bp | 3784435 |
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| Gene Length | 624 bp |
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| Protein Length | 207 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637394699 |
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| Product | outer membrane lipoprotein carrier protein |
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| Protein accession | NP_793131 |
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| Protein GI | 28870512 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2834] Outer membrane lipoprotein-sorting protein |
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| TIGRFAM ID | [TIGR00547] periplasmic chaperone LolA |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00496768 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCGTCTTA TCCGCATGCT GTTGGCCACC GCACTGACCT TCTCCGTCAT CCCGGCCCAT
GCCGATGGCA AGGACGTGGC ACGTCTGACC CAATTGCTGG AAAAATCCCA GACGCTGACC
GCACGCTTCT CGCAGTTGAC GCTGGACGGC GGCGGTACGC AGCTGCAGGA AACCACAGGC
GAAATGGCCT TGCAGCGCCC AGGCCTGTTC AACTGGCACA CCGACGCGCC TCAGGAACAA
CTGATGGTTT CCGACGGCAA GAAGGTCTCG CTGTGGGACC CTGATCTGGA GCAGGTCACG
ATCAAGAAGC TTGATCAGCG CCTGACACAG ACCCCGGCAT TGCTGCTGTC CGGTGACGTG
TCGAAGATCA GCGAAAGTTT TGATATCACC GCGAAAGAAG CTGGTGGTGT GATCGATTTC
ATGCTCAAGC CCAAGACCAA GGACACGCTG TTCGACAGCC TGCGCCTGTC GTTTCGCAAC
GGCATCATCA ATGATATGCA GTTGATCGAC AGCGTCGGGC AGCGCACCAA CATTCTGTTC
ACCGGCGTCA AAGCCAACGA GTCGATTGCT GCCAGCAAGT TTCAGTTCCA GATCCCCAAG
GGCGCTGATG TCATTCAAGA GTAA
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| Protein sequence | MRLIRMLLAT ALTFSVIPAH ADGKDVARLT QLLEKSQTLT ARFSQLTLDG GGTQLQETTG
EMALQRPGLF NWHTDAPQEQ LMVSDGKKVS LWDPDLEQVT IKKLDQRLTQ TPALLLSGDV
SKISESFDIT AKEAGGVIDF MLKPKTKDTL FDSLRLSFRN GIINDMQLID SVGQRTNILF
TGVKANESIA ASKFQFQIPK GADVIQE
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