| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3328 |
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| Symbol | tliF |
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| ID | 1184986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 3763908 |
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| End bp | 3765278 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637394678 |
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| Product | ABC transporter, permease protein |
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| Protein accession | NP_793111 |
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| Protein GI | 28870492 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.262756 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGCGTT ATCCTCTGAA AGCCGCTTTG CTGACGGCCA TCCTGCTGGG TACTGCGCCG
TTGAGTCATG CGATGGGACC GTTTCAGGTC TATGAGCTGG CGCTACGCAA TGACCCGACC
TACCTCGGCG CACTCAAGGA ACGCGATGCG GGCCTTGAGA ACCGGATCAT TGGTCGCGCC
GGCCTGTTGC CTCGCGTGTC GTACAACTAC AACAAAGGGC GCAACGATTC AAAAGCCACC
CTTAAAGGTG GCCGCGAAGA CACCACGGAT CATCGCCACT ACAACAGCTT TGGTTCAAGC
CTGACGATCC AGCAGCCGTT GATTGATTAC GAGGCCTACG CCAATTACCG CAAGGGCCTG
GCTCAGGCAC TGTTTGCCGA CGAGACCTTT CGCAGCAAGA GTCAGGAATT GCTGGTGCGG
GTGCTGACCC TTTACACCCA GGCACTGTTT GCTCAGGACC AGATCAGCAT CGCGCGCGCC
AAACAGCAGG CGTTCGAGCG CCAGTTTGCG CAGAACCGGC AGATGTTTCA GCAAGGCGAG
GGCACCCGTA CCGACATTCT GGAAGCTGAA TCGCGCAACG AGCTGGCGAT TGCCGAGCAG
ATCGAAGCCA GCGACGAACA GGACGCTGCC TTGCGTGAAC TGGCAGCGTT GCTGGGCGAG
CCGGGTATCG ATGTTTCGCA ACTGGACCCT TTGAAGGACA GTTTTCAGGC GTTGGTACTC
GCACCTTCAA GTTTCACCGA GTGGCATGCG CTGGCCGCGG CCAATAGCCC GATACTTGCG
TCGCAGCGTC AGGCAGTGGA AGTGGCGCGC TATGACGTGG AGCGCAATCG CGCCGGTCAT
CTGCCGACGG TGAATGCCTT CGCGAGCATT CGTCAGAACG AGTCGGACAG CGGCAACACC
TACAATCAGC GTTACGACAC TAACACCGTG GGCATCGAGG TCAGTCTGCC GTTGTACGCC
GGTGGCGGCA CCAGTGCTTC GGTGCGTCAG GCCAACAGCA AGCGTGAACA GGCTGAATAC
GAGCTGGAAG GCAAGACCCG TGAAACCCTG ATCGAGCTGC GTCGCCAGTT CAACGCCTGC
GCGTCCGGGG TGAGCAAGCT GCGCGCTTAT CAGAAAGCGT TGGTGTCGGC GCAGGCGCTG
GTCGAATCGA CACGCCAGAG CATTCTGGGT GGCGAGCGCA TCAGCCTGGA TGCGCTCAAC
GCCGAGCAGC AGCTCTACAG CACCCGGCGC GATCTGGCGA AAGCCCGTTA CGATTATTTG
ATGGCGTGGA TCAAACTGCA TTACTACGCC GGTACGTTGC GCGACACCGA TCTGGCGCGC
ATCGACGAGG CCTTCGTGCT GGCGCGCGAT GGCCGTGATC GGCAGCGGTA A
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| Protein sequence | MMRYPLKAAL LTAILLGTAP LSHAMGPFQV YELALRNDPT YLGALKERDA GLENRIIGRA
GLLPRVSYNY NKGRNDSKAT LKGGREDTTD HRHYNSFGSS LTIQQPLIDY EAYANYRKGL
AQALFADETF RSKSQELLVR VLTLYTQALF AQDQISIARA KQQAFERQFA QNRQMFQQGE
GTRTDILEAE SRNELAIAEQ IEASDEQDAA LRELAALLGE PGIDVSQLDP LKDSFQALVL
APSSFTEWHA LAAANSPILA SQRQAVEVAR YDVERNRAGH LPTVNAFASI RQNESDSGNT
YNQRYDTNTV GIEVSLPLYA GGGTSASVRQ ANSKREQAEY ELEGKTRETL IELRRQFNAC
ASGVSKLRAY QKALVSAQAL VESTRQSILG GERISLDALN AEQQLYSTRR DLAKARYDYL
MAWIKLHYYA GTLRDTDLAR IDEAFVLARD GRDRQR
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