Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3318 |
Symbol | |
ID | 1184976 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 3751384 |
End bp | 3754125 |
Gene Length | 2742 bp |
Protein Length | 913 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 637394668 |
Product | beta-glucosidase |
Protein accession | NP_793101 |
Protein GI | 28870482 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1472] Beta-glucosidase-related glycosidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00176622 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACAAGC GAAAGATGAT AGGCGCGCAC TCGGCGCTGG CCTTGCTGGC ACTGGCCGTT TCTCAGGTGC ACGCCGCTGA TCCGACTGTG CAGCAGGGAC GTGAAGACCG CGCTGAAAAA GCCGCGCAAA AGACCCTGGC GAAAATGACC ATGGAAGAAA AGCTGGCCTA CATCGGCGGC ACCGGCGGCT GGGATGTGAA GCCGCTGACC AACTACGGCG TTCCGCAGAT TCACGGCGCT GACGGCGGCG TGGGCGTGCG TTACACCAGC GAAGGCAACG ATCAGGGCGT GGTCTATCCG TCCGGCCCTA ACCTGGCAGC CACCTTCAAC CCGCGTCGCG CCATCGACCT GGGCCGTGCT CTGGGTTATG ACACTGCGAC CGGCGGCTAC CAGTTCATCA CAGGTCCAGG TGTAAACCTG TACCGCATGC CTTACGGCGG CCGTGCATTC GAATACCTTT CCGGTGAAGA TCCGTTCCTG GGCGCCAGCC TGGCACCGGG TGTCATCAAC GGTATCCAGT CCCGTGGTGT GTGGGCCAAC GCCAAGCACT ACGCGGCCAA CGACCAGGAA AGCAACCGTT TCAATCTTGA CCAGAAGATG CCCGAGCGCG TACTGCGTGA AATGTCGCTG CCTGCGTTCG AGTCGTCGTC GAAAAACGGC AATGTTGCGA TGATGATGTG CGCCTTCCAG AAAGTGAACG GTGATTTCGC CTGCGAAAGC GAGCACCTGA TCGCCCAGAT CCTGAAGAAG GAATGGGGCT ACAAAGGCTT CGTGCAGAGC GACTACAACG CTGTGGTGCA CGGCTTTGAA GCTGCCCGCG CCGGTACCGA TCTGGACATG ATGGGCTACC AGATGAACAG CTCCGTGCTC AAGCCGCACC TGGACGCCGG TGACCTGAGC GCTGCGACCA TCGATGACAA GGTGCGCCGC ATCCTCAAGC AGATCTACCT GTACAAGTTC GACAGCAAGG CACCGCTGAC CACCCACAAC ATGAACAGCT CGACCAGCAA CAAGGTCGCT CTGAATGCTG CGCGTGAAGG CATCGTGCTG CTGAAAAACC AGGGCGATCT GTTGCCACTG GACAAGCAGA AGGTCAAGAA AATCGCCGTC GTCGGCACCC TGGCCAAATA TGCACCACCG ACCGGTTTCG GTAGCGCCAA TGTCATGGCC AGCCATTACG TCAGCGAGTT GAGCGGCCTG CAGCAAATGG CACCCAACGC CAAGGTCGAG TTCATCGATG GCCTGTCGCT GGACCCAAGC ACCTCTGCCT GGAACACCAC TGACGCCGCT GGCAACAGTG TTCAGGGCAT GAAGGTCGAA TACTTCAGCA ACACCAACTG GTCTGGCGAT GCAGCGGTCA CCCGTACCGA GCAGCACGTT GACCTGGACT GGGCCAACGA CAAGAACCTG CCGTTCGAGA GCAACACCTC AACGTCCGAT CCGTACACCA CCAAAGGCTC GACCGCTGGT GAGCTGAACG GTGACACGTC TTCGACCTCG ATCCGCTACA CCGGCAAGAT CACCCCGACC CAGAGCGGCG AACAGGTGTT CAAGGTGCGT GCCGACGGCG CTGTGCGCCT GTGGGTCAAC GGCAAGAAAA TCATCGACAA CGGTGACGGC AAGCCATTGC CGGGCAACAG CATCCCGCCG ACCATTCCAG AGTTCGCCAA GATCAATCTG GAAGCAGGCC AGTCCTACGA CGTGAAGCTT GAGTACTCGC GTCGCGCCGG GTACCTGTCG ACCATGGGTG GTCTGGTCGG TGTGCAGTTG AGCTCCGCTT CGCTGAACGC GCCTCAGGAC CTGTCCGGTT ATGACGCGGT TGTGGTTGCA GTGGGTAACA GCAACGAATA CGAAGGTGAA GGTTTCGACC ACAGCTTCGA TCTGCCCGAG TTCCAGAACG AACTGATCCA GAACATCGCC AAGGTCAACC CGAACACCGT GGTGACCATG TATGGCGGTA CCGGCCTGAA GATGAGCGAC TGGATCGAAC AGGTTCCGGT AGCGCTGCAC GCCTTCTACC CGGGTCAGAA CGGTGGTCAG GCCCTGGCCG AAATTCTGTT CGGCAAGATC AACCCGTCGG GCAAGCTGCC GATCAGTATC GAACGCAACA TCGAAGACAA CCCGGCCTAC GCCTCCTTCC CGAAATTCGA CAACCAGAAC ACGCTGGCTG AAATGGATTA CAAGGATGAC CTGATGCTGG GTTATCGCGG TTACGAGAAG AAAGGCATCA AGCCGCTTTA CCCGTTCGGT TACGGCCTGT CGTACACCAC GTTCGGCTAC AGCAACATCA AAGTCACGCC AGGCGTCGCG GTGGGCAATA CGCCGATCAA GGTGTCCTTC GACCTGACCA ACACCGGCAA GGTCGGCGGT TCGGAAGTTG CACAGCTGTA CGTTGGCCAG CAGAACCCGA AAGTCGAGCG TCCGATCAAG GAACTCAAAG GCTACAAGAA GGTGTTCCTC AAGCCGGGTG AAAGCAAGCG CGTGACCATC GAGCTCAATG ACCGCTCGCT GGCCTACTTC GACGTGAAAA CCAACCAGTG GGTGGTTGAC GCCGACACCT TCAACCTGTC GCTGGGTGGC TCGTCGCAGG ACATTCGCCT GAACGCCAAG CTGGTCAACT CGTTCCGCCA GGAACTGTCG ACCACTACCA GCAACCCGCT GCCACGTTCG GCGCTGAACT CGGTGCTGGT CGAGAAGCCA CCGGTCAAGA CCGGTGGTGT GTTCCAGCAG ACTGTCGAGT AA
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Protein sequence | MNKRKMIGAH SALALLALAV SQVHAADPTV QQGREDRAEK AAQKTLAKMT MEEKLAYIGG TGGWDVKPLT NYGVPQIHGA DGGVGVRYTS EGNDQGVVYP SGPNLAATFN PRRAIDLGRA LGYDTATGGY QFITGPGVNL YRMPYGGRAF EYLSGEDPFL GASLAPGVIN GIQSRGVWAN AKHYAANDQE SNRFNLDQKM PERVLREMSL PAFESSSKNG NVAMMMCAFQ KVNGDFACES EHLIAQILKK EWGYKGFVQS DYNAVVHGFE AARAGTDLDM MGYQMNSSVL KPHLDAGDLS AATIDDKVRR ILKQIYLYKF DSKAPLTTHN MNSSTSNKVA LNAAREGIVL LKNQGDLLPL DKQKVKKIAV VGTLAKYAPP TGFGSANVMA SHYVSELSGL QQMAPNAKVE FIDGLSLDPS TSAWNTTDAA GNSVQGMKVE YFSNTNWSGD AAVTRTEQHV DLDWANDKNL PFESNTSTSD PYTTKGSTAG ELNGDTSSTS IRYTGKITPT QSGEQVFKVR ADGAVRLWVN GKKIIDNGDG KPLPGNSIPP TIPEFAKINL EAGQSYDVKL EYSRRAGYLS TMGGLVGVQL SSASLNAPQD LSGYDAVVVA VGNSNEYEGE GFDHSFDLPE FQNELIQNIA KVNPNTVVTM YGGTGLKMSD WIEQVPVALH AFYPGQNGGQ ALAEILFGKI NPSGKLPISI ERNIEDNPAY ASFPKFDNQN TLAEMDYKDD LMLGYRGYEK KGIKPLYPFG YGLSYTTFGY SNIKVTPGVA VGNTPIKVSF DLTNTGKVGG SEVAQLYVGQ QNPKVERPIK ELKGYKKVFL KPGESKRVTI ELNDRSLAYF DVKTNQWVVD ADTFNLSLGG SSQDIRLNAK LVNSFRQELS TTTSNPLPRS ALNSVLVEKP PVKTGGVFQQ TVE
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