Gene PSPTO_3317 details

Gene Information

• Locus tag: PSPTO_3317
• Symbol: gspE
• ID: 1184975
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 3748853
• End bp: 3750610
• Gene Length: 1758 bp
• Protein Length: 585 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637394667
• Product: general secretion pathway protein E
• Protein accession: NP_793100
• Protein GI: 28870481
• COG category: [N] Cell motility; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
• TIGRFAM ID: [TIGR02533] general secretory pathway protein E

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.209109
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCCTCC GAAGTAGCAA AATGCCCTCA TTCATGCCGT CAGTTCCCGT CGATGTTTCC 
CGTCTCCTCA TTCCGGATGC CGAACAGGTG TGCGCCTGGC TGATCGAAAA TGCCGGTCTG 
AAGACGGCCG ATCTGGAGCG CGCGCAACGG TTGCAGCAGG AGTCCGAAGG CACTGAGCTG 
CTCGGGCTGC TGACCCGGCT CGGCCTGGTG TCTGAATTTG AGCTGGCCCG CGCCTGGGCT 
GCGTTGTTGC AGGCACCGTT GTTGCTGGCT GACGCCGTGC CACCGCTGCT CGATCCATTG 
CCGCCGCTGA CCGAACGCTT CATGCGCCAC TATCAAGTGG TACCCGTGGG CTGGAGCGAT 
CAGGGGCTTC AGGTGCTAAG CGCCAACCCC GGCACGCTGT ACCCGTTTCA GGCCATCGCT 
TATGCCTGCG AAGTGCCGGT GCGCTTGTCC ATCGGGCCGC GCAACGAGGT CGAAACCCTG 
ATCGAGCGTT ATTACGGGCA GGGCCGCTCA GCGATGGGCA CCCTGATCGA GAACCTGGAC 
GACGAGGGTG GTTCGCTGGA AGACATTGAA CACCTCAAGG ACCTGGCCTC CGAAGCGCCG 
GTCATTCGTC TGGTCAACCT GATTCTGCAA CGCGCGGTCG AGCAGCGCGC TTCCGACATT 
CACATCGAGC CGTTTGAAAG CCAGTTGAAG GTGCGCTACC GAATCGACGG CGTACTGCAT 
GAAGCCGAAG CGCCACCGTC CAGTTCGTCG GCGGCGGTCA TTTCCCGTGT AAAGATCATG 
GCCCGGCTCG ACATCGCCGA GCGCCGATTG CCGCAGGACG GCCGGATCAT GCTGCGCATT 
CAGGGCAAGG AGCTGGACCT GCGGGTGTCC ACCGTGCCCA CCAGCTTTGG CGAATCGGTT 
GTGATGCGTC TGCTGGACCG GCAGACCATC AACTTCGATT TCCCGAGCCT GGGTTTCGAT 
GGTGAACGGC TGGATGAATT TCTCGATGTG CTGGAGCGTC CGCACGGCAT CCTGCTGGTC 
ACCGGGCCGA CGGGTTCAGG CAAGACCACC ACTCTTTATA CGGCGCTGTC ACGGCTCAAT 
ACCGCCGAGC GCAAGATCAT CACCGTTGAA GACCCGGTGG AGTATCAACT CGAAGGCATC 
AACCAGATTC AGGTCAAGCC CTCCATTGGC CTGGACTTCG CCGGGGCGCT GCGCTCCATC 
GTGCGTCAAG ACCCGGACGT GATCATGATC GGTGAGATGC GCGACCTGGA AACCTGCCGC 
ATCGCCATTC AGTCTTCGCT GACCGGTCAC CTGGTGCTGT CGACCCTGCA CACCAACAGC 
GCGGCGGCGA GTATTACCCG TCTGCTGGAC ATGGGCGTCG AAAGCTACCT GATCGCCTCG 
ACCGTCAATG GCATTCTGGC TCAGCGACTG GTGCGACGAC TGGACCCTGC CACCCGTGAA 
GCCTTCGATG CGCCGCCGGA GCTGATCGCC GAGCACGGGC TGGAGCGTTT TACCGACGAG 
CGCCCGATTC GCCTGTACCG ACCGCGCGCC GATGCACCGG GCGGCGGTTA TCGTGGGCGC 
AGCGCTATCA CCGAGTTGTT GGTGATGAAC GAAGAACTGC GCAGCCTGCT GATGCGTCAC 
GCTGACGCGT CCACTCTGGA AGAAGCGGCT CGCCGAGGCG GTTTGCGCAC CCTGCATGAA 
GAGGGCCTGC GCCAGGCAGT GGCCGGGGTG ACATCACTGG AGGAAGTGCT GCGCGTGACC 
CGTGGTGATG GCACATGA 

 

Protein sequence

MSLRSSKMPS FMPSVPVDVS RLLIPDAEQV CAWLIENAGL KTADLERAQR LQQESEGTEL 
LGLLTRLGLV SEFELARAWA ALLQAPLLLA DAVPPLLDPL PPLTERFMRH YQVVPVGWSD 
QGLQVLSANP GTLYPFQAIA YACEVPVRLS IGPRNEVETL IERYYGQGRS AMGTLIENLD 
DEGGSLEDIE HLKDLASEAP VIRLVNLILQ RAVEQRASDI HIEPFESQLK VRYRIDGVLH 
EAEAPPSSSS AAVISRVKIM ARLDIAERRL PQDGRIMLRI QGKELDLRVS TVPTSFGESV 
VMRLLDRQTI NFDFPSLGFD GERLDEFLDV LERPHGILLV TGPTGSGKTT TLYTALSRLN 
TAERKIITVE DPVEYQLEGI NQIQVKPSIG LDFAGALRSI VRQDPDVIMI GEMRDLETCR 
IAIQSSLTGH LVLSTLHTNS AAASITRLLD MGVESYLIAS TVNGILAQRL VRRLDPATRE 
AFDAPPELIA EHGLERFTDE RPIRLYRPRA DAPGGGYRGR SAITELLVMN EELRSLLMRH 
ADASTLEEAA RRGGLRTLHE EGLRQAVAGV TSLEEVLRVT RGDGT