| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3314 |
|---|
| Symbol | gspH |
|---|
| ID | 1184972 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3746754 |
|---|
| End bp | 3747188 |
|---|
| Gene Length | 435 bp |
|---|
| Protein Length | 144 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637394664 |
|---|
| Product | general secretion pathway protein H |
|---|
| Protein accession | NP_793097 |
|---|
| Protein GI | 28870478 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4970] Tfp pilus assembly protein FimT |
|---|
| TIGRFAM ID | [TIGR01708] general secretion pathway protein H
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.795481 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAACGT CTGTCGCAAG CCGGGGTTTT ACTCTCATGG AAATGCTGGT GGTGCTGGTG
TTGATGAGCA TCGCCGTCGG TCTGGTGGGT TTCGGTCTGC AACAGGGTTT GAGTACCGCC
AGCGAACGGC GGGCGGTCGG TGACATGGTC GAAGCGCTGC GGGCCACCCG AGTGCGGGCG
ATTGTCACCG GTCAACCGGC GCGCACCGAA TTCGACCTGC ACAAGGCGAC CTTCAAGGCG
CCCGGCAAGC GTGAGATGCA CTGGCCGCAG AGCTTGCGCG TGACGATGCA GACCTCGTCG
GACCTCGGCT CTTCGGTGGA GTTTTACCCG GACGGCGGTT CCAGTGGTGG CAACGTGGTT
GTCGCTGATG GCGATCGGCG CTGGCGCATT GATATTGGCT GGCTGACCGG TAGCGTCCAG
ATACGGTCGC TTTAA
|
|---|
| Protein sequence | MRTSVASRGF TLMEMLVVLV LMSIAVGLVG FGLQQGLSTA SERRAVGDMV EALRATRVRA
IVTGQPARTE FDLHKATFKA PGKREMHWPQ SLRVTMQTSS DLGSSVEFYP DGGSSGGNVV
VADGDRRWRI DIGWLTGSVQ IRSL
|
|---|
| |