Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3312 |
Symbol | |
ID | 1184970 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3745742 |
End bp | 3746374 |
Gene Length | 633 bp |
Protein Length | 210 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637394662 |
Product | general secretion pathway protein J, putative |
Protein accession | NP_793095 |
Protein GI | 28870476 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.218553 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGGCGCA CCCAGCGTGG CTTCACGCTG CTGGAAGTGT TGTTGGTGAT CAGCCTGCTG GGCGTGTTGC TGGTACTGGT TGCCGGCGCG CTGCTGGGGG CCAACCGCGC GGTGCTCAAG GCTGAGCGTT ACACCGTGAA CCTGGACAAG ACCCGCGCCG CGCAGGCATT CCTGCGCAGC TCGATCAGCC AGGCGCTGCC GCTGGACACG TCCGCCGAAG ATGACGTCAA CAGCGGTTTT TTTGAAGGCT CGGCTCAGCA GTTGCGTTTT GTCGCCACGC TGCCGGGTGA GTTGGGCGGC GGCATTCAAG TGCACAGCCT TGAACTCAAA GGGCCGCAAG GTCATCGGGC GCTGCAGGTG TCCTTTGCTC AGGTTCAGTC CGGGGCAAAT GGCGTGGCGC TCAAGCCGTG GGGCGAGCCT CAGGTATTGC TGCAAAACGT CGAGTCACTG ACGTTCAGTT ACCGGGGCCT TAACCCCAAG GGCAAGCCGA CAGGCTGGGT GCCCGAATGG CCCTGGCCGA ATCGTTTGCC GGGCGCTGTA CGCATCGACA TGCAGACCAG AGGGACGGTC AAGTGGGTTC CCGAAGTGGT GGCACTGCGT CTGGACCTGT CCGGTGGGGC GGGCGGCGAA TGA
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Protein sequence | MRRTQRGFTL LEVLLVISLL GVLLVLVAGA LLGANRAVLK AERYTVNLDK TRAAQAFLRS SISQALPLDT SAEDDVNSGF FEGSAQQLRF VATLPGELGG GIQVHSLELK GPQGHRALQV SFAQVQSGAN GVALKPWGEP QVLLQNVESL TFSYRGLNPK GKPTGWVPEW PWPNRLPGAV RIDMQTRGTV KWVPEVVALR LDLSGGAGGE
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