Gene PSPTO_3312 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3312 
Symbol 
ID1184970 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp3745742 
End bp3746374 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content64% 
IMG OID637394662 
Productgeneral secretion pathway protein J, putative 
Protein accessionNP_793095 
Protein GI28870476 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2165] Type II secretory pathway, pseudopilin PulG 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.218553 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGGCGCA CCCAGCGTGG CTTCACGCTG CTGGAAGTGT TGTTGGTGAT CAGCCTGCTG 
GGCGTGTTGC TGGTACTGGT TGCCGGCGCG CTGCTGGGGG CCAACCGCGC GGTGCTCAAG
GCTGAGCGTT ACACCGTGAA CCTGGACAAG ACCCGCGCCG CGCAGGCATT CCTGCGCAGC
TCGATCAGCC AGGCGCTGCC GCTGGACACG TCCGCCGAAG ATGACGTCAA CAGCGGTTTT
TTTGAAGGCT CGGCTCAGCA GTTGCGTTTT GTCGCCACGC TGCCGGGTGA GTTGGGCGGC
GGCATTCAAG TGCACAGCCT TGAACTCAAA GGGCCGCAAG GTCATCGGGC GCTGCAGGTG
TCCTTTGCTC AGGTTCAGTC CGGGGCAAAT GGCGTGGCGC TCAAGCCGTG GGGCGAGCCT
CAGGTATTGC TGCAAAACGT CGAGTCACTG ACGTTCAGTT ACCGGGGCCT TAACCCCAAG
GGCAAGCCGA CAGGCTGGGT GCCCGAATGG CCCTGGCCGA ATCGTTTGCC GGGCGCTGTA
CGCATCGACA TGCAGACCAG AGGGACGGTC AAGTGGGTTC CCGAAGTGGT GGCACTGCGT
CTGGACCTGT CCGGTGGGGC GGGCGGCGAA TGA
 
Protein sequence
MRRTQRGFTL LEVLLVISLL GVLLVLVAGA LLGANRAVLK AERYTVNLDK TRAAQAFLRS 
SISQALPLDT SAEDDVNSGF FEGSAQQLRF VATLPGELGG GIQVHSLELK GPQGHRALQV
SFAQVQSGAN GVALKPWGEP QVLLQNVESL TFSYRGLNPK GKPTGWVPEW PWPNRLPGAV
RIDMQTRGTV KWVPEVVALR LDLSGGAGGE