Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3307 |
Symbol | gspD |
ID | 1184965 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3740495 |
End bp | 3742786 |
Gene Length | 2292 bp |
Protein Length | 763 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637394657 |
Product | general secretion pathway protein D |
Protein accession | NP_793090 |
Protein GI | 28870471 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.335208 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCTTTGCC TGGCCACCGC CGTCGCCCTT GGCGGCTGCG CGTCACAGCC AGACACACTC GACCCCGACA ATGGCATGCT GCAGGAAGCG CTCCAGGGAA CCGGTTCACA ACGCCCGCCG GTAGACCCGC GCAGCGAACG ACCGCCCGTC GAGCCTCCTT CACAGCAGAC GGCGGCCTCG CCGCAGCGCC AGATCATCAA GGGCAATCAG CCTTTCATCC GCCAGCCCGC AGCGGCTCCG GCAGCGCGCC CGGCGGAGGC TGGCGACATT GTCTTCAACT TCACCAATCA GCCGATTCAG GCGGTGATCA ACAGCATCAT GGGCGACCTG CTGCACGAGA ACTACAGCAT TGCCCAAGGC GTGAAAGGCG ATGTGAGCTT CTCAACCTCC AAGCCGGTCA ACAAGCAGCA GGCGCTGTCG ATTCTCGAGA CGCTGTTGTC GTGGACCGAC AACGCGATGA TCAAGCAGGG CAATCGCTAC GTGATCCTGC CCTCGAATCA GGCTGTGGCC GGCAAGCTGG TACCGGAAAT GCCGGTGGCG CAACCGGCGG CGGGCATGTC GGCGCGGCTG TTTCCGCTGC GTTACATCTC GGCCACTGAA ATGCAGAAGC TGCTCAAGCC GTTCGCGCGG GAAAACGCGT TCCTGCTGGT CGATCCGGCG CGTAACGTAC TGAGCCTGGC GGGCACGCCC GAAGAACTGG CCAACTATCA GGACACTATC GACACGTTTG ATGTGGACTG GCTCAAAGGC ATGTCGGTCG GCGTATTTGG TCTGCAACGT GCCTCGGTTG GCGAACTGAT GCCTGAGCTG CAGAAAATCT TCGGCCCGCA AAGCGGCATG CCGCTGGCGG GCATGGTGCG TTTTCTGCCG ATCGAGCGGA CCAATTCGGT GGTGGCGATT TCCTCGCAGC CCGAGTACCT GCGTGAAGTC GGCGAATGGA TTCACACCAT CGACGAAGGC GGCGGCAACG AGCCGCAGAT GTACGTGTAC GACGTACGCA ACATGAAGGC CACCGACCTC GCCAAATACC TGCGACAGAT CTATGGCACA GGTGCTATCA AGGATGATTC GCCCGCCAAG GTTGCGCCGG GCCTGCGCAC CACCACGCTG TCGTCACTCA ATTCCAGCGG CGGCAGTGGC TCTGGCGGCA TGAGCAGCTC CAGTGGCCTG GGCGGCAATA GCAGCGGCAT GAGCAACGGC ATGAGCAACG GCGGTGGCTT TGGCAACAGC CAGGGCATGA ACAACAGCCA GAACAGCGCC GACAGCGAAT CCGAAGGCGA CGATCAGAGC GGCAGCGAAG CGGATTCTTC CAGTCAGGAC GACAGCGGGT CGAACGCCGG CAGCAAGTCG CTGGATGCCA GCACCCGCAT CACCGCACAG AAGAGCAGCA ACCAGTTGCT GGTGCGCACG CGTCCGGCGC AGTGGAAAGA GATCGAATCA GCGATCAAGC GCCTCGACAA TCCGCCGCTG CAAGTGCAGA TAGAGACGCG AATTCTGGAG GTCAAACTCA CCGGCGAACT GGACATGGGG GTGCAATGGT ACTTGGGCCG TCTGGCCGGT AACTCGGGCA CCACCGGCAA TGTCACCAAC ACCCCTGGCA GCCAGGGTTC GCTTGGCACT GGCGGCGCAG CGCTGGCCGC CACCGACTCG TTTTTCTATT CGTTTGTCAG CAATAATCTG CAGGTCGCTC TGCGTGCACT GGAAACCAAC GGTCGTACTC AGGTGCTGTC GGCACCGTCG CTGGTGGTCA TGAACAACCA GCAGGCGCAG ATTCAGGTGG GTGACAACAT CCCTATCAGC CAGACCTCAA TCAACACCAA CACGGCTACC AACACCACGT TGAGCAGCGT CGAATACGTG CAGACCGGTG TCATTCTCGA CGTCGTGCCG CGCATCAATC CGGGCGGCCT GGTGTACATG GATATTCAGC AACAGGTGAG CGATGCTGAC ACCGGCACTG CCTCCACTGA CCTGAACGGC AATCCGCGTA TTTCGACCCG TTCAGTGTCG ACGCAAGTCG CCGCGCAGAG TGGTCAGACG GTGCTGTTGG GCGGGTTGAT CAAGCAGGAT AATTCCGAGA CGGTCAGCGC GGTGCCTTAT CTGGGGCGTA TTCCAGGCTT GAAATGGTTG TTCGGCAACT CCAGCAAATC CAAGGACCGC ACCGAGCTGA TCGTGCTGAT CACGCCGCGA GTCATCACCA GCAGCAGTCA GGCGCGTCAG GTGACCGATG ATTACCGTCA ACAGATGCAG TTGCTCAAAC CCGAGGTTTC ACGGACCAGC ATGCAGAACT GA
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Protein sequence | MLCLATAVAL GGCASQPDTL DPDNGMLQEA LQGTGSQRPP VDPRSERPPV EPPSQQTAAS PQRQIIKGNQ PFIRQPAAAP AARPAEAGDI VFNFTNQPIQ AVINSIMGDL LHENYSIAQG VKGDVSFSTS KPVNKQQALS ILETLLSWTD NAMIKQGNRY VILPSNQAVA GKLVPEMPVA QPAAGMSARL FPLRYISATE MQKLLKPFAR ENAFLLVDPA RNVLSLAGTP EELANYQDTI DTFDVDWLKG MSVGVFGLQR ASVGELMPEL QKIFGPQSGM PLAGMVRFLP IERTNSVVAI SSQPEYLREV GEWIHTIDEG GGNEPQMYVY DVRNMKATDL AKYLRQIYGT GAIKDDSPAK VAPGLRTTTL SSLNSSGGSG SGGMSSSSGL GGNSSGMSNG MSNGGGFGNS QGMNNSQNSA DSESEGDDQS GSEADSSSQD DSGSNAGSKS LDASTRITAQ KSSNQLLVRT RPAQWKEIES AIKRLDNPPL QVQIETRILE VKLTGELDMG VQWYLGRLAG NSGTTGNVTN TPGSQGSLGT GGAALAATDS FFYSFVSNNL QVALRALETN GRTQVLSAPS LVVMNNQQAQ IQVGDNIPIS QTSINTNTAT NTTLSSVEYV QTGVILDVVP RINPGGLVYM DIQQQVSDAD TGTASTDLNG NPRISTRSVS TQVAAQSGQT VLLGGLIKQD NSETVSAVPY LGRIPGLKWL FGNSSKSKDR TELIVLITPR VITSSSQARQ VTDDYRQQMQ LLKPEVSRTS MQN
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