| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3292 |
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| Symbol | hopAH2-1 |
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| ID | 1184950 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3721153 |
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| End bp | 3722367 |
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| Gene Length | 1215 bp |
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| Protein Length | 404 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 637394642 |
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| Product | type III effector HopAH2-1 |
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| Protein accession | NP_793075 |
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| Protein GI | 28870456 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.622578 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATATCA ATTCAATCCG GTCCTATGAC CTTTCGATGG CCGCGCCAGA AAAATCTGCT
GTAACGAACA AAGCCACATT GCCCGTGAAC GCTGGCAACA ATGATGCCCC TACGACCAGA
CAGTCAAAAC TTGACACCTA TACCGCCAGC CATAAATACG ATTCATCAGG ACGCCCCGCA
GAGGCGCCGG AAACTGCTCC GGTTTACACA AAAGCATTGC TTAACCGCAA CGCCCAACTG
CAGAAATCAG CCGCCCCCTC GGACACGGCT CCGGCCGGTC AACAGCAGGT TGCAACGGCA
GTGACTAAAA ACGCACTTCA GAGCAACGCG GTAACTGTCG AAGAGAAAGT TTCGGGGCCG
ACCCCAAATG CCAGCAATGC GGATACTGGC TCGCATGGCG GTGCCAATGT GGATCCGGGT
GACATCGCTA CACCTGCAGC CGCCACTAAA ATGATTCAGG ACCTGAAAGG GATTGGCGGC
GGGACGTTAC GTATCCAGAT GACACACGAT CAAATCCAGG ACACCAAGGA GATGGATAAA
CTCACTGCAT TGGTTAATGA AGGGGATAAA CAAGGCGTAA AAGTCCAGTT TACATTTCGT
GACAACGCGA ACGGTGGTGG CGGAAGCGTA CTGACGGGTG ACAAGTTGAA TCAGGCCTCG
ACCGACATCA GCAATGTGGT CAAAAAATTC GGCGGTCACT CCAGCTTCGT ATTGGACACT
TTCAATGAAG GTGGCACATC AGCCACCCAA GGCTGGGCTG ACATGGAAAG TACGCTGATC
AAATCGGCAC GCAACGCCGG CTACAAGGGA AGCATCGTTG TGGAGGACAG CAACTGGGGA
GGTGGTTTGA CTGCAGGCCC CGAGAGCGGC CTGGTGAAAT ACGCCGATCA ATTAAAAGCG
GCCAACGGCA AAGGCAACCC CGGCTTGATT GGCAGCATTC ATGAATATGC CAGTGGTGCA
GACGCTTCTG CCCGCTTGGG CAACGAGATA AAAGCACTGC AAAATGCAGG CTATAAACCT
CAGATTGGCG AAGTGGGTAA TGCCAACTGG CTGGGAGGCG ACAAGTTTGA AGAAAGAGAC
GGCGCCACTA AAGCCGTGCG GGATAATCTT GCCGCACTGA AAGCGGCGGG TGCGGATATA
TTGCCCTGGA AGGATCAGTT CCAGGATGGC AAACTTCGCC ACCATGTCGG ATTTTCAAAG
TCAGATCAAT ACTGA
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| Protein sequence | MNINSIRSYD LSMAAPEKSA VTNKATLPVN AGNNDAPTTR QSKLDTYTAS HKYDSSGRPA
EAPETAPVYT KALLNRNAQL QKSAAPSDTA PAGQQQVATA VTKNALQSNA VTVEEKVSGP
TPNASNADTG SHGGANVDPG DIATPAAATK MIQDLKGIGG GTLRIQMTHD QIQDTKEMDK
LTALVNEGDK QGVKVQFTFR DNANGGGGSV LTGDKLNQAS TDISNVVKKF GGHSSFVLDT
FNEGGTSATQ GWADMESTLI KSARNAGYKG SIVVEDSNWG GGLTAGPESG LVKYADQLKA
ANGKGNPGLI GSIHEYASGA DASARLGNEI KALQNAGYKP QIGEVGNANW LGGDKFEERD
GATKAVRDNL AALKAAGADI LPWKDQFQDG KLRHHVGFSK SDQY
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