Gene PSPTO_3286 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3286 
Symbol 
ID1184944 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand+ 
Start bp3714339 
End bp3714992 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content59% 
IMG OID637394636 
Producthypothetical protein 
Protein accessionNP_793069 
Protein GI28870450 
COG category[S] Function unknown 
COG ID[COG4291] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCCATC TTGCCCGCAC CCGCCCTCGC CTGACTCTCG CAGCCCTGGT TGGCTTGACC 
GCAGGCATCG CCTGGGCCTG GCTCATCCCC CACGCAACAC TCACGCAAAG CCTGCTGACG 
GGCTGGGACA CAGGCGTGTG GCTTTATCTG ATTCTGATCT TCGTCCGCAC ACTGCATAGC 
AATGCTGACG ATGTCCGGCG AGTTGCACTG ATGGAAGACG AAAACGCCGG CGTCATTCTT 
GTCACGGTGT GCGTTGCAGC CCTGGCCAGC CTGGCCGCCA TCATTTTCGA GGTCGCTGGC 
AGCAAGGGCC TTTCCAGCGA CGCCAAAATG CTCCATCACG CCTTCACCGG CCTGACCGTC 
ATCGGCTCAT GGTTGATGAT CGGGGTGATC TTCAGCCTGC ATTACGCACG CATGTTCTAC 
ACCTGGAACG GCAAGGAGCC GGCACTGGCC TTCGTCGGCG GCGAAAAGCA TCCGGACTAC 
TGGGACTTTC TGTACTTCTC GTTCACCCTC AGCGTGGCAG TACAGACCTC CGACGTGGGC 
GTAGCAACCC GTGAAATGCG TAAGGTCGTG CTGGGCCAGT CGTTGATCTG CTTTGTCTTC 
AACACCGCCA TTCTGGGTTT TTCGATCAAC ATTGCCGCCA GCCTGTTCAA CTAA
 
Protein sequence
MRHLARTRPR LTLAALVGLT AGIAWAWLIP HATLTQSLLT GWDTGVWLYL ILIFVRTLHS 
NADDVRRVAL MEDENAGVIL VTVCVAALAS LAAIIFEVAG SKGLSSDAKM LHHAFTGLTV 
IGSWLMIGVI FSLHYARMFY TWNGKEPALA FVGGEKHPDY WDFLYFSFTL SVAVQTSDVG 
VATREMRKVV LGQSLICFVF NTAILGFSIN IAASLFN