| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3273 |
|---|
| Symbol | |
|---|
| ID | 1184931 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 3698579 |
|---|
| End bp | 3699079 |
|---|
| Gene Length | 501 bp |
|---|
| Protein Length | 166 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637394623 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_793056 |
|---|
| Protein GI | 28870437 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG3613] Nucleoside 2-deoxyribosyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0797812 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGCGC CATTGGTTTA TCTGGCTGGG TTCGACGTGT TTCGACCCGA TGCGATCGAG
TACGGTCGCT ACCTCAAGGC GTTGTGCGCG GCGCATGGGC TTGAAGGGCT GTATCCGTTC
GACAGCGAGG TGACGCCGGG GCAAACGCTG CATGAAACCG CGCGGCAGAT TTATGCGATG
AATGTCGCGA TGATTCAGCG CTGTTCTGCG GTGCTGGCCA ATCTGAATGT GTTTCGCGGC
CTGGAGCCGG ACTCGGGCAC TGCGTTTGAA GTGGGTATGG CTGTGGCGTT GAACAAGCCG
GTGTGGGTGT ACTTTGAGCC GGTGGCTTCG CTGCGCGAAC TGGTCGTTCA TGACGACAAC
GGTCTGGACC GGAACGGTTT TACGGTTGAG GACTTTGAAC TGCCGCGTAA TCTGATGCTC
GCCTGCAGTT GGGCGGGAAC CAGTTCGACG GTGGAGCTTG GGGCTGAGGC GCTGGCGAAG
TACTTGAGTG AGCGTGTTTG A
|
|---|
| Protein sequence | MQAPLVYLAG FDVFRPDAIE YGRYLKALCA AHGLEGLYPF DSEVTPGQTL HETARQIYAM
NVAMIQRCSA VLANLNVFRG LEPDSGTAFE VGMAVALNKP VWVYFEPVAS LRELVVHDDN
GLDRNGFTVE DFELPRNLML ACSWAGTSST VELGAEALAK YLSERV
|
|---|
| |