Gene PSPTO_3263 details

Gene Information

• Locus tag: PSPTO_3263
• Symbol: nirD
• ID: 1184921
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 3689020
• End bp: 3689406
• Gene Length: 387 bp
• Protein Length: 128 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 637394613
• Product: nitrite reductase [NAD(P)H], small subunit
• Protein accession: NP_793046
• Protein GI: 28870427
• COG category: [P] Inorganic ion transport and metabolism; [R] General function prediction only
• COG ID: [COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases
• TIGRFAM ID: [TIGR02378] nitrite reductase [NAD(P)H], small subunit

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.358038
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATTCGC CTGAAACAAC GTGGACTGAA GAAAACAGCT CTTGCGCGCT GCATCTGCAC 
TGGTATGCCC TGTGTGAGCG CAAGGACCTG GTCGCCAATT CCGGCGTGGT GGCCTGGCTG 
GACGGGAAAC AGTTAGCGCT GTTCTATCTA CCTGACACAG CGCAAGGAGA GCAATTGTTT 
GCCATCGACA ACCGCGACCC GAAATCCGGT GCGAATGTGA TCGGACGTGG GCTGACTGGC 
CAGATTGCGG GTGAGCTGGT TATTGCCTCG CCGCTGTACA AGCAGCATTT TCGCCTGCAC 
GACGGCAGTT GCATCGAGTA CCCGGAACAG CGCCTGGAAG TCTGGCCGGT GCGCCTGAAC 
GGCGAACGGG TGGAAATTGC GGTCTAG 

 

Protein sequence

MNSPETTWTE ENSSCALHLH WYALCERKDL VANSGVVAWL DGKQLALFYL PDTAQGEQLF 
AIDNRDPKSG ANVIGRGLTG QIAGELVIAS PLYKQHFRLH DGSCIEYPEQ RLEVWPVRLN 
GERVEIAV