| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3262 |
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| Symbol | nirB |
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| ID | 1184920 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 3686459 |
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| End bp | 3689020 |
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| Gene Length | 2562 bp |
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| Protein Length | 853 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637394612 |
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| Product | nitrite reductase [NAD(P)H], large subunit |
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| Protein accession | NP_793045 |
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| Protein GI | 28870426 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1251] NAD(P)H-nitrite reductase |
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| TIGRFAM ID | [TIGR02374] nitrite reductase [NAD(P)H], large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.143316 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACACCA CAGTCTTCCC CCGCACTGAT GTAAAAACCC TGATCGTCGT CGGTAATGGC
ATGGTCGGTC ATCATTGCGT CGAGCAGTTG ATCGAAGGCG GCGCGCTTGA GCATTATCGT
ATTCACGTTT TCGGCGAGGA GTCTCAGCGT GCCTATGATC GTGTGCACCT GTCCGAGTAT
TTCACCGGGC GCGATGCCGA ATCGCTGGCC ATGAGTGAAA TGGCCTTGTA CGAGCAAGCC
GGCCTCACCT TGCACCTGGG CGTACCGGTG CTGGAGATCG ACCGTGGCCG TCACGAGATC
ATTACCGCAG AAGGCTGTTT CTGTTACGAC AAACTGATCC TGGCCACCGG TTCCTATCCG
TTCGTGCCGC CTATCGAAGG CGCGCAGGGT AATTCCCGGC TGGTCTACCG CACCCTCGAA
GACCTGGACA CCATTCGTTA CGCCGCCTCT AAAGCAAAAC GCGGCGTGGT GGTTGGTGGT
GGCTTGCTGG GGCTGGAGGC GGCCAATGCG TTGAAGTCAC TCGGCCTTGA AGCCCATGTC
GTCGAATTTG CCCCGCGCCT GATGCCGGTG CAGCTGGACG AGCACGGCGG TGCCGCGCTG
AAAGCGCGCA TCGAAGCGTT GGGGGTCGGT GTGCATCTGT CCCGCGCCAC GCAATCGATC
AGCGACGGCA AGCAATATCG CTATCGGATG AATTTTGCCA ACGACGAATT TCTGGAAACC
GATCTGATCG TGTTTTCCGC CGGTATTCGT CCGCAGGATT CGCTGGCCCG GCAGTGCGCG
CTGGAACTCG GCCCGCGCGG CGGTGTTGCC ATCGACGAAC ACTGCCGCAC CAGCGACGCC
GATATCTATG CAATTGGCGA ATGCGCGGCC TGGAACGGCA GTGTGTTCGG TCTGGTTGCC
CCCGGCTATC AGATGGCCCG TGGCGTGGCA GCGCAGTTGT GCGGAAAAGA AACCGACGCG
TTCTTCGGCG CCGACATGTC CACCAAGCTC AAACTGCTGG GCGTAGACGT GGGCTCTATC
GGTGATGCGC ACGGTGCGCT GGCCGGGGCC GTAAGCTATC GCTTTATCGA CGAGGCCAGC
GGCAGTTACA GGCGCCTGGT GGTGTCGGCC GACGGCAAGC AGGTGCTCGG CGCTGTGCTG
GTCGGCGACA ACAGTTATTA CGACACACTG CTGCAGTACG CGCAGAACGG CATCACCCTG
CCAGCCGACC CGTCCAGCCT GATCCTGCCG CGTGGCGAAG GTGCGCCGAC GCTGGGCGCC
GATGCCCTGC CCGCCACAGC GACCATCTGT TCCTGTCATA ACGTCAGCAA AGGCTCGATC
TGTTCAGCCA TCGACAATGG CTGCACCGAC CTGGCCGGGA TCAAGGCCTG CACCAAGGCC
GCCACCGGTT GCGGCGGCTG TACGGCGCTG CTCAAGCAGG TGTTCGAACA TGAACTGATT
GCCCGTGGCG TGGCGGTGGA CAAGAGCCTC TGCGAACACT TCGCCTACAC CCGCCAGGAG
TTGTACTCGA TCGTGCGCGT CGAAGGCATC GAAAGCTTCG ATGAACTGCT GGATCGGCAC
GGCAAGGGCG CGCATGGCTG CGACATCTGC AAGCCTGCGG TCGGCTCGAT TCTCGCCTCA
TGCTGGAACC GTCCGATCAC CGAGCCTTCG CTGGTGCCAT TGCAGGACAC CAACGACACG
TTCATGGCCA ACATGCAGAA AAACGGCACT TACTCGGTCG TGCCGCGCAT TCCAGGTGGC
GAAATCACCC CCGACGGGTT GATCGCGATT GGCGCGGTGG CCAAGAAATA CGACCTGTAC
ACCAAGATCA CCGGCGGCCA GCGTATCGAT CTGTTTGGCG CGCAATTGCA CGAGTTGCCA
GACATCTGGA GCGAGTTGAT CGCCGCCGGT TTCGAGACCG GGCATGCCTA CGGTAAATCG
ACCCGCACGG TGAAGTCCTG CGTCGGCAGC ACCTGGTGCC GCTATGGCGT GCAGGACAGC
GTCGCCATGG CGTTACGCAT CGAAGATCGT TACAAGGGCC TGCGTTCGCC ACACAAACTC
AAGTTCGCAG TGTCCGGCTG CACCCGCGAA TGCGCCGAAG CACAGAGCAA GGACGTTGGT
GTGATCGCCA CCGAGAATGG CTGGAACCTG TACCTGTGCG GCAACGGCGG CATGCGCCCG
CGCCACGCCG AGCTGTTCGC CACTGATCTG GATGACGAGA CCCTGATCCG TTACATCGAC
CGCTTCCTGA TGCTCTACAT CCGCACCGCC GACAAGCTGC AGCGCACCTC GGTGTGGCGA
AAAACACTGG AAGGTGGCCT GGACTACCTC AAAGCGGTGA TTCTCGATGA CAGCCTGGGC
CTGGCAGCCG AGCTTGAATC GCAGATGCAA CTGGTGGTGG ATCGCTACGA GTGCGAGTGG
GCCAATGCCC TCAAGGACCC GGAAAAACTC AAGCGCTTCC GCACCTTCGT CAACGACGGG
CGCAGCGACC CCGACGTGCA CTTCGTCAAG GAACGCGCTC AGCGTCGCCC GGCAAAACCT
GAAGAACTGG CGCTTATTCC GTTGTTCAAG GAGGTGGTGT AA
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| Protein sequence | MNTTVFPRTD VKTLIVVGNG MVGHHCVEQL IEGGALEHYR IHVFGEESQR AYDRVHLSEY
FTGRDAESLA MSEMALYEQA GLTLHLGVPV LEIDRGRHEI ITAEGCFCYD KLILATGSYP
FVPPIEGAQG NSRLVYRTLE DLDTIRYAAS KAKRGVVVGG GLLGLEAANA LKSLGLEAHV
VEFAPRLMPV QLDEHGGAAL KARIEALGVG VHLSRATQSI SDGKQYRYRM NFANDEFLET
DLIVFSAGIR PQDSLARQCA LELGPRGGVA IDEHCRTSDA DIYAIGECAA WNGSVFGLVA
PGYQMARGVA AQLCGKETDA FFGADMSTKL KLLGVDVGSI GDAHGALAGA VSYRFIDEAS
GSYRRLVVSA DGKQVLGAVL VGDNSYYDTL LQYAQNGITL PADPSSLILP RGEGAPTLGA
DALPATATIC SCHNVSKGSI CSAIDNGCTD LAGIKACTKA ATGCGGCTAL LKQVFEHELI
ARGVAVDKSL CEHFAYTRQE LYSIVRVEGI ESFDELLDRH GKGAHGCDIC KPAVGSILAS
CWNRPITEPS LVPLQDTNDT FMANMQKNGT YSVVPRIPGG EITPDGLIAI GAVAKKYDLY
TKITGGQRID LFGAQLHELP DIWSELIAAG FETGHAYGKS TRTVKSCVGS TWCRYGVQDS
VAMALRIEDR YKGLRSPHKL KFAVSGCTRE CAEAQSKDVG VIATENGWNL YLCGNGGMRP
RHAELFATDL DDETLIRYID RFLMLYIRTA DKLQRTSVWR KTLEGGLDYL KAVILDDSLG
LAAELESQMQ LVVDRYECEW ANALKDPEKL KRFRTFVNDG RSDPDVHFVK ERAQRRPAKP
EELALIPLFK EVV
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