Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3259 |
Symbol | |
ID | 1184917 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 3683180 |
End bp | 3685186 |
Gene Length | 2007 bp |
Protein Length | 668 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637394609 |
Product | peptidase, U32 family |
Protein accession | NP_793042 |
Protein GI | 28870423 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0826] Collagenase and related proteases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.104421 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGTTAC CCAAGCACCA CCTGGAATTG CTCAGCCCTG CCCGGGATGT GACCATCGCC CGCGAAGCCA TCCTGCATGG CGCCGACGCG GTATACATCG GCGGGCCGAG CTTTGGTGCG CGACACAACG CCTGCAACGA GGTCAGCGAT ATCGCCGAAC TGGTGAAATT TGCCCATCGC TACCACGCGC GAATCTTCAC CACGATCAAC ACCATCCTGC ATGACGACGA GCTGGAACCG GCGCGCAAGC TGATCCATCA GCTCTACGAT GCAGGTGTCG ATGCGCTGAT CGTCCAAGAC CTCGGGGTCA TGGAGCTGGA CATTCCGCCC ATCGAGTTGC ACGCCAGCAC GCAGACCGAT ATTCGCACCC TGGGCCGGGC GAAGTTTCTT GATCAGGCCG GTTTCTCGCA ACTGGTGCTG GCCCGCGAGC TGAACCTGCA GGAAATTCGT GACATCGCCC GTGAAACCGA CGCGGCCATC GAGTTCTTCA TCCACGGCGC ACTGTGTGTG GCGTTCTCCG GGCAGTGCAA CATTTCCCAT GCGCAAAATG GCCGCAGCGC CAACCGTGGC GACTGCTCGC AAGCCTGCCG CCTGCCGTAC ACGCTCAAGG ATGATCAGGG CCGCGTCGTC GCTTTCGAAA AACACCTGCT GTCGATGAAA GACAACAACC AGAGCGCCAA CCTGGGCGAT CTGGTGGACG CTGGCGTGCG CTCGTTCAAG ATCGAAGGTC GCTATAAAGA CGCAGGCTAC GTCAAAAACA TTACCGCCTA TTACCGTCAG CGTCTGGACG AGATTCTTGA AGACCGCCCG GACCTGGCGC GCGCCTCCAG CGGCCGCACC GCGCATTTTT TCGTGCCCGA CCCGGAGAAG ACCTTTCACC GTGGCAGCAC CGATTACTTT GTCAGCGACC GCAAGATCGA CATCGGCGCA TTCGATACGC CGACGTTTAC CGGCTTGGCA GTCGGCACCG TCGAGAAACT TGGCAAGCGT GACCTGATCG CTGTCACCCA TGAGCCGCTG TCCAATGGCG ACGGCCTCAA TGTGCAGATC AAGCGTGAAG TGGTGGGCTT CCGGGCCAAT ATCTGCGAGC TCAAAGGCGA GTTTGAAGAA GAAGGCGAGA AGCGCTGGCG CTACCGAGTA GAGCCCAACG AGATGCCGGC GGCCCTCTCC CGCCTGCGCC CCAACCATCC GCTGAACCGT AACCTGGATC ACAACTGGCA GCAGGCGTTG CTCAAGACTT CCGCCGAGCG CCGCATCGGC ATTCAGTGGC AGGTTGCGTT GCGTGAAGAT CACTTGAGCC TTAACGCGAC CAGTGAAGAA GGCGTGAGCG TGATGGTCGG CCTGGACGGC CCGTTCGGTG CAGCCAACAA GCCCGAGCAG GCGCTGGATC AGTTGCGTGA TCTGCTCATC CAGCTAGGCA CCACGATCTA CCATGCTCAG GACGTGGAAC TGGATGCGCC TCAAGCGTTT TTCGTGCCCA ATTCGCAACT CAAGGCACTG CGCCGCGATG CCATCGAGGC GCTGACCGAG GCGCGCATAC AGGCTCACCC GCGCGGTGGA CGCAAGGCAG AAACCACCCC GCCACCGGTT TACCCTGATT CGCACCTGTC GTTTCTGGCC AACGTTTACA ACCAGAAAGC TCGCGATTTC TACCACCGCC ACGGCGTGCA GTTGATCGAT GCGGCTTACG AAGCGCATGA GGAAACCGGC GAGGTGCCGG TGATGATCAC CAAGCATTGT CTGCGCTTCT CGTTCAACCT GTGCCCGAAA CAGGCAAAAG GCGTGACCGG CGTGCGCACC AAGGTCGCGC CCATGCAGTT GGTGCAGGGT GACGAAGTGC TGACCCTGAA GTTCGACTGC AAGCCGTGTG AAATGCACGT GATCGGCAAG ATGAAGGGCC ACATCCTCGA CCTGCCATTG CCCGGCAGCG CTGCGGCCAA ATCGGTGGTC GGCCACATCA CCCCGGAAGA CCTGCTCAAG ACTGCCCGCC AGCGTCATCC GCGCTGA
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Protein sequence | MSLPKHHLEL LSPARDVTIA REAILHGADA VYIGGPSFGA RHNACNEVSD IAELVKFAHR YHARIFTTIN TILHDDELEP ARKLIHQLYD AGVDALIVQD LGVMELDIPP IELHASTQTD IRTLGRAKFL DQAGFSQLVL ARELNLQEIR DIARETDAAI EFFIHGALCV AFSGQCNISH AQNGRSANRG DCSQACRLPY TLKDDQGRVV AFEKHLLSMK DNNQSANLGD LVDAGVRSFK IEGRYKDAGY VKNITAYYRQ RLDEILEDRP DLARASSGRT AHFFVPDPEK TFHRGSTDYF VSDRKIDIGA FDTPTFTGLA VGTVEKLGKR DLIAVTHEPL SNGDGLNVQI KREVVGFRAN ICELKGEFEE EGEKRWRYRV EPNEMPAALS RLRPNHPLNR NLDHNWQQAL LKTSAERRIG IQWQVALRED HLSLNATSEE GVSVMVGLDG PFGAANKPEQ ALDQLRDLLI QLGTTIYHAQ DVELDAPQAF FVPNSQLKAL RRDAIEALTE ARIQAHPRGG RKAETTPPPV YPDSHLSFLA NVYNQKARDF YHRHGVQLID AAYEAHEETG EVPVMITKHC LRFSFNLCPK QAKGVTGVRT KVAPMQLVQG DEVLTLKFDC KPCEMHVIGK MKGHILDLPL PGSAAAKSVV GHITPEDLLK TARQRHPR
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