Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3250 |
Symbol | |
ID | 1184908 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 3674545 |
End bp | 3675450 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637394601 |
Product | dipeptide ABC transporter, permease protein DppC, putative |
Protein accession | NP_793034 |
Protein GI | 28870415 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.193894 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGACTT CCCTTGCAAG CAGCGCCAAA CCGCTCATCC ACGCCCCGAC GTCAAGCCTT GCAGCCTTCG CTGCCAGCGG CGTTCGCCTG ATGCGTTTTC TGTTGCGCAA CCCGATGACC CTGGCGGGCC TGATTGTCAT CGTGACGTTG CTGATTGTTG CCCTATTCGC GCCGTGGATC GCCACCCATG ACCCGCTCGC CCAGGACCTG TCTGCAGCCT TGCGCATGCC CGGCGCACAG CACTGGTTCG GCACCGATGA ATACGGCCGC GATGTGTTCA GCCGGCTGGT GTACGGCTCG CGCATCACGC TGTACATCGT GATGCTGGTG ACCGTGATCG TCGGCCCGAT CGGCCTGTTG ATCGGCACTG TTTCCGGCTA TTTCGGTGGC TGGGTGGACA GCCTGTTCAT GCGCATCACC GATATCTTCA TCTCGTTCCC CAGCCTGGTG CTGGCGCTGG CGTTCATCGC CGCCCTTGGT CCGGGACTGG AGCACGCGGT CATCGCCATC GCCCTCACCG CCTGGCCGCC AATCGCACGC CTGGCGCGGG CCGAAACCCT GTCGCTGCGC AACGCCGATT TCGTTGTGGC GGTGAAGCTG CAAGGCGCCT CGGCAGTGCG GGTGATCGGT CGCCACATCA TTCCGATGTG CCTGTCCTCG GTGATCATCC GCCTGACCAT GAACATGGCC AGCATCATCC TCACTGCCGC GGCACTGGGC TTTCTCGGCC TCGGCGCTCA GGCACCGCTG CCGGAATGGG GCGCGATGAT CTCCAGCGGC CGGCGCTACA TGCTCGAAAG CTGGTGGCTG GTGGCGGCAC CCGGCGCCAC CATCATGCTG GTCAGCCTGG CGTTCAATCT GCTGGGCGAC GGCCTGCGCG ATGTGCTCGA CCCGCGCAGC GAATGA
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Protein sequence | MTTSLASSAK PLIHAPTSSL AAFAASGVRL MRFLLRNPMT LAGLIVIVTL LIVALFAPWI ATHDPLAQDL SAALRMPGAQ HWFGTDEYGR DVFSRLVYGS RITLYIVMLV TVIVGPIGLL IGTVSGYFGG WVDSLFMRIT DIFISFPSLV LALAFIAALG PGLEHAVIAI ALTAWPPIAR LARAETLSLR NADFVVAVKL QGASAVRVIG RHIIPMCLSS VIIRLTMNMA SIILTAAALG FLGLGAQAPL PEWGAMISSG RRYMLESWWL VAAPGATIML VSLAFNLLGD GLRDVLDPRS E
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