Gene PSPTO_3250 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3250 
Symbol 
ID1184908 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp3674545 
End bp3675450 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content65% 
IMG OID637394601 
Productdipeptide ABC transporter, permease protein DppC, putative 
Protein accessionNP_793034 
Protein GI28870415 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.193894 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGACTT CCCTTGCAAG CAGCGCCAAA CCGCTCATCC ACGCCCCGAC GTCAAGCCTT 
GCAGCCTTCG CTGCCAGCGG CGTTCGCCTG ATGCGTTTTC TGTTGCGCAA CCCGATGACC
CTGGCGGGCC TGATTGTCAT CGTGACGTTG CTGATTGTTG CCCTATTCGC GCCGTGGATC
GCCACCCATG ACCCGCTCGC CCAGGACCTG TCTGCAGCCT TGCGCATGCC CGGCGCACAG
CACTGGTTCG GCACCGATGA ATACGGCCGC GATGTGTTCA GCCGGCTGGT GTACGGCTCG
CGCATCACGC TGTACATCGT GATGCTGGTG ACCGTGATCG TCGGCCCGAT CGGCCTGTTG
ATCGGCACTG TTTCCGGCTA TTTCGGTGGC TGGGTGGACA GCCTGTTCAT GCGCATCACC
GATATCTTCA TCTCGTTCCC CAGCCTGGTG CTGGCGCTGG CGTTCATCGC CGCCCTTGGT
CCGGGACTGG AGCACGCGGT CATCGCCATC GCCCTCACCG CCTGGCCGCC AATCGCACGC
CTGGCGCGGG CCGAAACCCT GTCGCTGCGC AACGCCGATT TCGTTGTGGC GGTGAAGCTG
CAAGGCGCCT CGGCAGTGCG GGTGATCGGT CGCCACATCA TTCCGATGTG CCTGTCCTCG
GTGATCATCC GCCTGACCAT GAACATGGCC AGCATCATCC TCACTGCCGC GGCACTGGGC
TTTCTCGGCC TCGGCGCTCA GGCACCGCTG CCGGAATGGG GCGCGATGAT CTCCAGCGGC
CGGCGCTACA TGCTCGAAAG CTGGTGGCTG GTGGCGGCAC CCGGCGCCAC CATCATGCTG
GTCAGCCTGG CGTTCAATCT GCTGGGCGAC GGCCTGCGCG ATGTGCTCGA CCCGCGCAGC
GAATGA
 
Protein sequence
MTTSLASSAK PLIHAPTSSL AAFAASGVRL MRFLLRNPMT LAGLIVIVTL LIVALFAPWI 
ATHDPLAQDL SAALRMPGAQ HWFGTDEYGR DVFSRLVYGS RITLYIVMLV TVIVGPIGLL
IGTVSGYFGG WVDSLFMRIT DIFISFPSLV LALAFIAALG PGLEHAVIAI ALTAWPPIAR
LARAETLSLR NADFVVAVKL QGASAVRVIG RHIIPMCLSS VIIRLTMNMA SIILTAAALG
FLGLGAQAPL PEWGAMISSG RRYMLESWWL VAAPGATIML VSLAFNLLGD GLRDVLDPRS
E