Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_3239 |
Symbol | tolR-1 |
ID | 1184897 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 3660407 |
End bp | 3660853 |
Gene Length | 447 bp |
Protein Length | 148 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637394590 |
Product | tolR protein |
Protein accession | NP_793023 |
Protein GI | 28870404 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0848] Biopolymer transport protein |
TIGRFAM ID | [TIGR02801] TolR protein |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.24442 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTGGTCA AACCGCAACG CAAACATGGC CCGAAAGCCG AAATGAATGT CGTGCCGTAC ATCGACGTGA TGCTGGTGCT GCTGGTGATC TTCATGGTCA CCGCGCCGAT GCTCACTCAA GGTGTGAAGC TCGATTTGCC GAAAATCGCC AGCGAGGCGC TTGCCAGCGA TACCCGGCAG CGCATCGTGA CCTTGTCCGT CAAGGCGCAG GGCGGCTACT ACTGGAACCT CGGTGAAACG CTTGACACCC AGGCGCAGAC CGATCAGGCC GCCAGCCTGG AAGACATGCA GGGGCGCATT GCCCAACTGG TTGCCGAGCG CAAGGACACC CAGGTGTTTA TCCGTGCCGA CGACAAAGCC GATTATGGCC GGGTGGTCGC TGCCATGGCT GCGCTGCAAC GCAGTGGCGT GACCCGGTTG GGGCTGGTGA CCGAGGCACC GCAATGA
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Protein sequence | MLVKPQRKHG PKAEMNVVPY IDVMLVLLVI FMVTAPMLTQ GVKLDLPKIA SEALASDTRQ RIVTLSVKAQ GGYYWNLGET LDTQAQTDQA ASLEDMQGRI AQLVAERKDT QVFIRADDKA DYGRVVAAMA ALQRSGVTRL GLVTEAPQ
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