Gene PSPTO_3239 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_3239 
SymboltolR-1 
ID1184897 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp3660407 
End bp3660853 
Gene Length447 bp 
Protein Length148 aa 
Translation table11 
GC content61% 
IMG OID637394590 
ProducttolR protein 
Protein accessionNP_793023 
Protein GI28870404 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0848] Biopolymer transport protein 
TIGRFAM ID[TIGR02801] TolR protein 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.24442 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGGTCA AACCGCAACG CAAACATGGC CCGAAAGCCG AAATGAATGT CGTGCCGTAC 
ATCGACGTGA TGCTGGTGCT GCTGGTGATC TTCATGGTCA CCGCGCCGAT GCTCACTCAA
GGTGTGAAGC TCGATTTGCC GAAAATCGCC AGCGAGGCGC TTGCCAGCGA TACCCGGCAG
CGCATCGTGA CCTTGTCCGT CAAGGCGCAG GGCGGCTACT ACTGGAACCT CGGTGAAACG
CTTGACACCC AGGCGCAGAC CGATCAGGCC GCCAGCCTGG AAGACATGCA GGGGCGCATT
GCCCAACTGG TTGCCGAGCG CAAGGACACC CAGGTGTTTA TCCGTGCCGA CGACAAAGCC
GATTATGGCC GGGTGGTCGC TGCCATGGCT GCGCTGCAAC GCAGTGGCGT GACCCGGTTG
GGGCTGGTGA CCGAGGCACC GCAATGA
 
Protein sequence
MLVKPQRKHG PKAEMNVVPY IDVMLVLLVI FMVTAPMLTQ GVKLDLPKIA SEALASDTRQ 
RIVTLSVKAQ GGYYWNLGET LDTQAQTDQA ASLEDMQGRI AQLVAERKDT QVFIRADDKA
DYGRVVAAMA ALQRSGVTRL GLVTEAPQ