| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_3196 |
|---|
| Symbol | |
|---|
| ID | 1184853 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 3589345 |
|---|
| End bp | 3590259 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637394550 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | NP_792984 |
|---|
| Protein GI | 28870365 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00241672 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATCGC TCGGTAGCAT TGCGCTGTTT GTGCTGGTCA CAGAAACACG AAGTTTTACC
CTGGCGGGCA AGCGCCTGGG TATTTCTTCA TCGGGTGTGG GCAAGAGTGT CGGTCGTCTG
GAGGAAAGCC TGGGCGTGCG GCTTTTTCAT CGCAGCACCC GCAGCATTGC CTTGACGCTT
GAGGGGTCGA TATTTCTCGA TCGCTGCAGA CGCATTCTGT CGGAGCTGGA CGCCGCGCAG
TTGGAGCTGA GCAATGCCCG GGATTTGCCA AAAGGCCGGC TGCGTATCAG CGTGCCATTG
GTTTTCGGGC TGGTAATGCC GGTCGTTATC CAGTTCATGC GCACCTATCC CGAGATTGAG
CTGGACATCG ACTTCTCAGA CCGTATGGTC GATATCATCG ACGAGGGATT TGACGTTGTC
CTGCGCACCG GAGAACCGAG CGATTCCAGG CTCATGTCGA AAAGAATGGG CAGTTTTCAG
TTGTGCATTG TCGGCTCACC GGATTATTTT GCCCGGCATG GACTGCCTGA ACAGCCTGCC
GACCTGATAC ATCACGCCTG TTTGCAGCAC AAGTTTCCCT CCACCGGAAA GTTTGAACAC
TGGCCGCTGC GTCGTGAGCC CGGATCCGAG GATTTCGAGT TGCCGCAGAC CATGGTGTGC
AATACCACCG AAGTGCTTGT CGAAGTTGCG CGAGCAGGCC TGGGCATTAC CTGCCTGCCG
GATTTCATGC TGGCCTCTGC CATCCGCAAA GGTGAATTGA TACCGATATT GTCTGATTAC
ACTCTGCACA CCGGGAGCTT CAGATTGTTC TGGGCATCGA GCAAGCATCT TTCCGTGCGT
TTGCGGGTGT TTATCGACTT CATGCACGCG AATTTGTTTG CGCCTGCGAG GGTTGGTCAG
GAAGGCCGAT CTTAA
|
|---|
| Protein sequence | MESLGSIALF VLVTETRSFT LAGKRLGISS SGVGKSVGRL EESLGVRLFH RSTRSIALTL
EGSIFLDRCR RILSELDAAQ LELSNARDLP KGRLRISVPL VFGLVMPVVI QFMRTYPEIE
LDIDFSDRMV DIIDEGFDVV LRTGEPSDSR LMSKRMGSFQ LCIVGSPDYF ARHGLPEQPA
DLIHHACLQH KFPSTGKFEH WPLRREPGSE DFELPQTMVC NTTEVLVEVA RAGLGITCLP
DFMLASAIRK GELIPILSDY TLHTGSFRLF WASSKHLSVR LRVFIDFMHA NLFAPARVGQ
EGRS
|
|---|
| |